Comparative genomic analyses reveal a vast, novel network of nucleotide-centric systems in biological conflicts, immunity and signaling
Published 2015 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Comparative genomic analyses reveal a vast, novel network of nucleotide-centric systems in biological conflicts, immunity and signaling
Authors
Keywords
-
Journal
NUCLEIC ACIDS RESEARCH
Volume 43, Issue 22, Pages 10633-10654
Publisher
Oxford University Press (OUP)
Online
2015-11-21
DOI
10.1093/nar/gkv1267
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Toll/interleukin-1 receptor (TIR) domain-mediated cellular signaling pathways
- (2015) Kannan Badri Narayanan et al. APOPTOSIS
- Proteasomal Control of Cytokinin Synthesis Protects Mycobacterium tuberculosis against Nitric Oxide
- (2015) Marie I. Samanovic et al. MOLECULAR CELL
- A jack of all trades: the multiple roles of the unique essential second messenger cyclic di-AMP
- (2015) Fabian M. Commichau et al. MOLECULAR MICROBIOLOGY
- Cyclic di-GMP acts as a cell cycle oscillator to drive chromosome replication
- (2015) C. Lori et al. NATURE
- Complex archaea that bridge the gap between prokaryotes and eukaryotes
- (2015) Anja Spang et al. NATURE
- Control of bacterial exoelectrogenesis by c-AMP-GMP
- (2015) James W. Nelson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- GEMM-I riboswitches fromGeobactersense the bacterial second messenger cyclic AMP-GMP
- (2015) Colleen A. Kellenberger et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Structural Basis for the Catalytic Mechanism of DncV, Bacterial Homolog of Cyclic GMP-AMP Synthase
- (2015) Kazuki Kato et al. STRUCTURE
- The Activation Mechanism of 2′-5′-Oligoadenylate Synthetase Gives New Insights Into OAS/cGAS Triggers of Innate Immunity
- (2015) Jan Lohöfener et al. STRUCTURE
- Resilience of biochemical activity in protein domains in the face of structural divergence
- (2014) Dapeng Zhang et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- The Chromosome Axis Controls Meiotic Events through a Hierarchical Assembly of HORMA Domain Proteins
- (2014) Yumi Kim et al. DEVELOPMENTAL CELL
- RNA Granule Assembly and Disassembly Modulated by Nuclear Factor Associated with Double-stranded RNA 2 and Nuclear Factor 45
- (2014) Nobuyuki Shiina et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Bidirectional Modulation of Thermal and Chemical Sensitivity of TRPM8 Channels by the Initial Region of the N-terminal Domain
- (2014) María Pertusa et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Protein and DNA Modifications: Evolutionary Imprints of Bacterial Biochemical Diversification and Geochemistry on the Provenance of Eukaryotic Epigenetics
- (2014) L. Aravind et al. Cold Spring Harbor Perspectives in Biology
- The Cytosolic DNA Sensor cGAS Forms an Oligomeric Complex with DNA and Undergoes Switch-like Conformational Changes in the Activation Loop
- (2014) Xu Zhang et al. Cell Reports
- CARF and WYL domains: ligand-binding regulators of prokaryotic defense systems
- (2014) Kira S. Makarova et al. Frontiers in Genetics
- CRISPR-Mediated Adaptive Immune Systems in Bacteria and Archaea
- (2013) Rotem Sorek et al. Annual Review of Biochemistry
- Biological roles of cAMP: variations on a theme in the different kingdoms of life
- (2013) Juana M. Gancedo BIOLOGICAL REVIEWS
- Comprehensive analysis of the HEPN superfamily: identification of novel roles in intra-genomic conflicts, defense, pathogenesis and RNA processing
- (2013) Vivek Anantharaman et al. Biology Direct
- Interaction of Apurinic/Apyrimidinic Endonucleases Nfo and ExoA with the DNA Integrity Scanning Protein DisA in the Processing of Oxidative DNA Damage during Bacillus subtilis Spore Outgrowth
- (2013) S. S. Campos et al. JOURNAL OF BACTERIOLOGY
- Characterization of the Nucleoid-associated Protein YejK
- (2013) Chong Lee et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Crystal Structure of the Cmr2–Cmr3 Subcomplex in the CRISPR–Cas RNA Silencing Effector Complex
- (2013) Takuo Osawa et al. JOURNAL OF MOLECULAR BIOLOGY
- The cGAS-STING Pathway for DNA Sensing
- (2013) T. Sam Xiao et al. MOLECULAR CELL
- Computational identification of novel biochemical systems involved in oxidation, glycosylation and other complex modifications of bases in DNA
- (2013) Lakshminarayan M. Iyer et al. NUCLEIC ACIDS RESEARCH
- Pfam: the protein families database
- (2013) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- Structure of Human cGAS Reveals a Conserved Family of Second-Messenger Enzymes in Innate Immunity
- (2013) Philip J. Kranzusch et al. Cell Reports
- New perspectives on the diversification of the RNA interference system: insights from comparative genomics and small RNA sequencing
- (2013) Alexander Maxwell Burroughs et al. Wiley Interdisciplinary Reviews-RNA
- Live virus-free or die: coupling of antivirus immunity and programmed suicide or dormancy in prokaryotes
- (2012) Kira S Makarova et al. Biology Direct
- Polymorphic toxin systems: Comprehensive characterization of trafficking modes, processing, mechanisms of action, immunity and ecology using comparative genomics
- (2012) Dapeng Zhang et al. Biology Direct
- Coordinated Regulation of Accessory Genetic Elements Produces Cyclic Di-Nucleotides for V. cholerae Virulence
- (2012) Bryan W. Davies et al. CELL
- Nucleotide, c-di-GMP, c-di-AMP, cGMP, cAMP, (p)ppGpp signaling in bacteria and implications in pathogenesis
- (2012) Dimpy Kalia et al. CHEMICAL SOCIETY REVIEWS
- Crystal structure of Cmr2 suggests a nucleotide cyclase-related enzyme in type III CRISPR-Cas systems
- (2012) Xing Zhu et al. FEBS LETTERS
- Posttranslational Modification of Cellular Proteins by a Ubiquitin-like Protein in Bacteria
- (2012) Naoki Shigi JOURNAL OF BIOLOGICAL CHEMISTRY
- Structure of the Cytoplasmic Region of PelD, a Degenerate Diguanylate Cyclase Receptor That Regulates Exopolysaccharide Production inPseudomonas aeruginosa
- (2012) John C. Whitney et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Identification of novel components of NAD-utilizing metabolic pathways and prediction of their biochemical functions
- (2012) Robson Francisco de Souza et al. Molecular BioSystems
- Ter-dependent stress response systems: novel pathways related to metal sensing, production of a nucleoside-like metabolite, and DNA-processing
- (2012) Vivek Anantharaman et al. Molecular BioSystems
- The wobble nucleotide-excising anticodon nuclease RloC is governed by the zinc-hook and DNA-dependent ATPase of its Rad50-like region
- (2012) D. Klaiman et al. NUCLEIC ACIDS RESEARCH
- Cytokinin signaling as a positional cue for patterning the apical-basal axis of the growing Arabidopsis shoot meristem
- (2012) V. S. Chickarmane et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Structure of the Cmr2 Subunit of the CRISPR-Cas RNA Silencing Complex
- (2012) Alexis I. Cocozaki et al. STRUCTURE
- Gene flow and biological conflict systems in the origin and evolution of eukaryotes
- (2012) L. Aravind et al. Frontiers in Cellular and Infection Microbiology
- pSLA2-M ofStreptomyces rocheiIs a Composite Linear Plasmid Characterized by Self-Defense Genes and Homology with pSLA2-L
- (2011) Yingjie YANG et al. BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY
- Toxins-antitoxins: diversity, evolution and function
- (2011) Finbarr Hayes et al. CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY
- c-di-AMP reports DNA integrity during sporulation in Bacillus subtilis
- (2011) Yaara Oppenheimer-Shaanan et al. EMBO REPORTS
- The natural history of ubiquitin and ubiquitin-related domains
- (2011) Alexander Maxwell Burroughs Frontiers in Bioscience-Landmark
- Insights from the architecture of the bacterial transcription apparatus
- (2011) Lakshminarayan M. Iyer et al. JOURNAL OF STRUCTURAL BIOLOGY
- The NF90/NF45 Complex Participates in DNA Break Repair via Nonhomologous End Joining
- (2011) R. A. Shamanna et al. MOLECULAR AND CELLULAR BIOLOGY
- Functional diversification of the RING finger and other binuclear treble clef domains in prokaryotes and the early evolution of the ubiquitin system
- (2011) A. Maxwell Burroughs et al. Molecular BioSystems
- Two linked genes encoding a secreted effector and a membrane protein are essential for Ustilago maydis-induced tumour formation
- (2011) Gunther Doehlemann et al. MOLECULAR MICROBIOLOGY
- Cyclic GMP controls Rhodospirillum centenum cyst development
- (2011) Jeremiah N. Marden et al. MOLECULAR MICROBIOLOGY
- A novel immunity system for bacterial nucleic acid degrading toxins and its recruitment in various eukaryotic and DNA viral systems
- (2011) Dapeng Zhang et al. NUCLEIC ACIDS RESEARCH
- Signalling by the global regulatory molecule ppGpp in bacteria and chloroplasts of land plants
- (2011) Y. Tozawa et al. PLANT BIOLOGY
- Arabidopsis lonely guy (LOG) multiple mutants reveal a central role of the LOG-dependent pathway in cytokinin activation
- (2011) Hiroki Tokunaga et al. PLANT JOURNAL
- The RelA/SpoT Homolog (RSH) Superfamily: Distribution and Functional Evolution of ppGpp Synthetases and Hydrolases across the Tree of Life
- (2011) Gemma C. Atkinson et al. PLoS One
- Intrinsic and extrinsic regulation of type III secretion gene expression in Pseudomonas aeruginosa
- (2011) Diaz Frontiers in Microbiology
- DUFs: families in search of function
- (2010) Alex Bateman et al. Acta Crystallographica Section F-Structural Biology and Crystallization Communications
- Presence of a classical RRM-fold palm domain in Thg1-type 3'- 5'nucleic acid polymerases and the origin of the GGDEF and CRISPR polymerase domains
- (2010) Vivek Anantharaman et al. Biology Direct
- Ubiquitin-like small archaeal modifier proteins (SAMPs) in Haloferax volcanii
- (2010) Matthew A. Humbard et al. NATURE
- Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group
- (2010) Takuro Nunoura et al. NUCLEIC ACIDS RESEARCH
- FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
- (2010) Morgan N. Price et al. PLoS One
- Cell-cell signal-dependent dynamic interactions between HD-GYP and GGDEF domain proteins mediate virulence in Xanthomonas campestris
- (2010) R. P. Ryan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Structure of Vibrio cholerae ToxT reveals a mechanism for fatty acid regulation of virulence genes
- (2010) M. J. Lowden et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Requirement for the N-Terminal Coiled-Coil Domain for Expression and Function, but not Subunit Interaction of, the ADPR-Activated TRPM2 Channel
- (2009) Zhu-Zhong Mei et al. JOURNAL OF MEMBRANE BIOLOGY
- Determinants for the Activation and Autoinhibition of the Diguanylate Cyclase Response Regulator WspR
- (2009) Nabanita De et al. JOURNAL OF MOLECULAR BIOLOGY
- Comprehensive classification of nucleotidyltransferase fold proteins: identification of novel families and their representatives in human
- (2009) Krzysztof Kuchta et al. NUCLEIC ACIDS RESEARCH
- Molecular basis for cytokinin biosynthesis
- (2009) Tomoe Kamada-Nobusada et al. PHYTOCHEMISTRY
- Functional Analyses of LONELY GUY Cytokinin-Activating Enzymes Reveal the Importance of the Direct Activation Pathway in Arabidopsis
- (2009) T. Kuroha et al. PLANT CELL
- Microbial TIR domains: not necessarily agents of subversion?
- (2009) Abigail M. Spear et al. TRENDS IN MICROBIOLOGY
- Mouse HORMAD1 and HORMAD2, Two Conserved Meiotic Chromosomal Proteins, Are Depleted from Synapsed Chromosome Axes with the Help of TRIP13 AAA-ATPase
- (2009) Lukasz Wojtasz et al. PLoS Genetics
- Searching protein structure databases with DaliLite v.3
- (2008) L. Holm et al. BIOINFORMATICS
- MutL homologs in restriction-modification systems and the origin of eukaryotic MORC ATPases
- (2008) Lakshminarayan M Iyer et al. Biology Direct
- Distribution of Genes for Virulence and Ecological Fitness among Diverse Vibrio cholerae Population in a Cholera Endemic Area: Tracking the Evolution of Pathogenic Strains
- (2008) M. Hasibur Rahman et al. DNA AND CELL BIOLOGY
- Structural Biochemistry of a Bacterial Checkpoint Protein Reveals Diadenylate Cyclase Activity Regulated by DNA Recombination Intermediates
- (2008) Gregor Witte et al. MOLECULAR CELL
- Carbon catabolite repression in bacteria: many ways to make the most out of nutrients
- (2008) Boris Görke et al. NATURE REVIEWS MICROBIOLOGY
- Role of an N-Terminal Splice Segment in the Activation of the Cation Channel TRPM2 by ADP-Ribose and Hydrogen Peroxide
- (2008) Frank J. P. Kühn et al. NEUROCHEMICAL RESEARCH
- The Jpred 3 secondary structure prediction server
- (2008) C. Cole et al. NUCLEIC ACIDS RESEARCH
- Kalign2: high-performance multiple alignment of protein and nucleotide sequences allowing external features
- (2008) Timo Lassmann et al. NUCLEIC ACIDS RESEARCH
- Natural history of the E1-like superfamily: Implication for adenylation, sulfur transfer, and ubiquitin conjugation
- (2008) A. Maxwell Burroughs et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Evolutionary determinants of divergent calcium selectivity of TRPM channels
- (2007) Michael Mederos y Schnitzler et al. FASEB JOURNAL
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now