UG/Abi: a highly diverse family of prokaryotic reverse transcriptases associated with defense functions
出版年份 2022 全文链接
标题
UG/Abi: a highly diverse family of prokaryotic reverse transcriptases associated with defense functions
作者
关键词
-
出版物
NUCLEIC ACIDS RESEARCH
Volume -, Issue -, Pages -
出版商
Oxford University Press (OUP)
发表日期
2022-06-02
DOI
10.1093/nar/gkac467
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Phages and their satellites encode hotspots of antiviral systems
- (2022) François Rousset et al. Cell Host & Microbe
- The impact of genetic diversity on gene essentiality within the Escherichia coli species
- (2021) François Rousset et al. Nature Microbiology
- Massive expansion of human gut bacteriophage diversity
- (2021) Luis F. Camarillo-Guerrero et al. CELL
- Streamlining CRISPR spacer-based bacterial host predictions to decipher the viral dark matter
- (2021) Moïra B Dion et al. NUCLEIC ACIDS RESEARCH
- Analysis of metagenome-assembled viral genomes from the human gut reveals diverse putative CrAss-like phages with unique genomic features
- (2021) Natalya Yutin et al. Nature Communications
- Methylation of rRNA as a host defense against rampant group II intron retrotransposition
- (2021) Justin M. Waldern et al. Mobile DNA
- Microbial Arsenal of Antiviral Defenses. Part II
- (2021) Artem B. Isaev et al. BIOCHEMISTRY-MOSCOW
- A nucleotide-sensing endonuclease from the Gabija bacterial defense system
- (2021) Rui Cheng et al. NUCLEIC ACIDS RESEARCH
- Expanding Diversity of Firmicutes Single-Strand Annealing Proteins: A Putative Role of Bacteriophage-Host Arms Race
- (2021) Kamil Steczkiewicz et al. Frontiers in Microbiology
- Thousands of previously unknown phages discovered in whole-community human gut metagenomes
- (2021) Sean Benler et al. Microbiome
- tRNAscan-SE 2.0: improved detection and functional classification of transfer RNA genes
- (2021) Patricia P Chan et al. NUCLEIC ACIDS RESEARCH
- Identification and classification of reverse transcriptases in bacterial genomes and metagenomes
- (2021) Fatemeh Sharifi et al. NUCLEIC ACIDS RESEARCH
- Comprehensive discovery of CRISPR-targeted terminally redundant sequences in the human gut metagenome: Viruses, plasmids, and more
- (2021) Ryota Sugimoto et al. PLoS Computational Biology
- Estimating the power of sequence covariation for detecting conserved RNA structure
- (2020) Elena Rivas et al. BIOINFORMATICS
- Improved protein structure prediction using predicted interresidue orientations
- (2020) Jianyi Yang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Abortive Infection: Bacterial Suicide as an Antiviral Immune Strategy
- (2020) Anna Lopatina et al. Annual Review of Virology
- Prokaryotic viperins produce diverse antiviral molecules
- (2020) Aude Bernheim et al. NATURE
- mMGE: a database for human metagenomic extrachromosomal mobile genetic elements
- (2020) Senying Lai et al. NUCLEIC ACIDS RESEARCH
- Diverse enzymatic activities mediate antiviral immunity in prokaryotes
- (2020) Linyi Gao et al. SCIENCE
- Diversity and classification of cyclic-oligonucleotide-based anti-phage signalling systems
- (2020) Adi Millman et al. Nature Microbiology
- Bacterial Retrons Function In Anti-Phage Defense
- (2020) Adi Millman et al. CELL
- Systematic prediction of genes functionally associated with bacterial retrons and classification of the encoded tripartite systems
- (2020) Mario Rodríguez Mestre et al. NUCLEIC ACIDS RESEARCH
- MMseqs2 desktop and local web server app for fast, interactive sequence searches
- (2019) M Mirdita et al. BIOINFORMATICS
- Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases
- (2019) Jason Lloyd-Price et al. NATURE
- Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks
- (2019) Ho Bin Jang et al. NATURE BIOTECHNOLOGY
- Multiple origins of reverse transcriptases linked to CRISPR-Cas systems
- (2019) Nicolás Toro et al. RNA Biology
- HH-suite3 for fast remote homology detection and deep protein annotation
- (2019) Martin Steinegger et al. BMC BIOINFORMATICS
- The EFI Web Resource for Genomic Enzymology Tools: Leveraging Protein, Genome, and Metagenome Databases to Discover Novel Enzymes and Metabolic Pathways
- (2019) Rémi Zallot et al. BIOCHEMISTRY
- Evolutionary entanglement of mobile genetic elements and host defence systems: guns for hire
- (2019) Eugene V. Koonin et al. NATURE REVIEWS GENETICS
- Database resources of the National Center for Biotechnology Information
- (2019) Eric W Sayers et al. NUCLEIC ACIDS RESEARCH
- DALI and the persistence of protein shape
- (2019) Liisa Holm PROTEIN SCIENCE
- Major New Microbial Groups Expand Diversity and Alter our Understanding of the Tree of Life
- (2018) Cindy J. Castelle et al. CELL
- Biochemical properties of bacterial reverse transcriptase-related (rvt) gene products: multimerization, protein priming, and nucleotide preference
- (2018) Irina A. Yushenova et al. CURRENT GENETICS
- Novel Families of Archaeo-Eukaryotic Primases Associated with Mobile Genetic Elements of Bacteria and Archaea
- (2018) Darius Kazlauskas et al. JOURNAL OF MOLECULAR BIOLOGY
- Cas13d Is a Compact RNA-Targeting Type VI CRISPR Effector Positively Modulated by a WYL-Domain-Containing Accessory Protein
- (2018) Winston X. Yan et al. MOLECULAR CELL
- CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins
- (2018) David Couvin et al. NUCLEIC ACIDS RESEARCH
- eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
- (2018) Jaime Huerta-Cepas et al. NUCLEIC ACIDS RESEARCH
- High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
- (2018) Chirag Jain et al. Nature Communications
- The first demonstration of the existence of reverse transcriptases in bacteria
- (2017) Masayori Inouye GENE
- ModelFinder: fast model selection for accurate phylogenetic estimates
- (2017) Subha Kalyaanamoorthy et al. NATURE METHODS
- Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions
- (2017) Zasha Weinberg et al. NUCLEIC ACIDS RESEARCH
- ECOD: new developments in the evolutionary classification of domains
- (2016) R. Dustin Schaeffer et al. NUCLEIC ACIDS RESEARCH
- Prokaryotic Virus Orthologous Groups (pVOGs): a resource for comparative genomics and protein family annotation
- (2016) Ana Laura Grazziotin et al. NUCLEIC ACIDS RESEARCH
- A Novel Approach to Helicobacter pylori Pan-Genome Analysis for Identification of Genomic Islands
- (2016) Ikuo Uchiyama et al. PLoS One
- Deep transcriptome profiling of clinicalKlebsiella pneumoniaeisolates reveals strain and sequence type-specific adaptation
- (2015) Sebastian Bruchmann et al. ENVIRONMENTAL MICROBIOLOGY
- Comparative genomic analyses reveal a vast, novel network of nucleotide-centric systems in biological conflicts, immunity and signaling
- (2015) A. Maxwell Burroughs et al. NUCLEIC ACIDS RESEARCH
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- Tn5 transposase and tagmentation procedures for massively scaled sequencing projects
- (2014) Simone Picelli et al. GENOME RESEARCH
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- Comprehensive Phylogenetic Analysis of Bacterial Reverse Transcriptases
- (2014) Nicolás Toro et al. PLoS One
- CARF and WYL domains: ligand-binding regulators of prokaryotic defense systems
- (2014) Kira S. Makarova et al. Frontiers in Genetics
- Infernal 1.1: 100-fold faster RNA homology searches
- (2013) E. P. Nawrocki et al. BIOINFORMATICS
- Comprehensive analysis of the HEPN superfamily: identification of novel roles in intra-genomic conflicts, defense, pathogenesis and RNA processing
- (2013) Vivek Anantharaman et al. Biology Direct
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- CD-HIT: accelerated for clustering the next-generation sequencing data
- (2012) Limin Fu et al. BIOINFORMATICS
- Live virus-free or die: coupling of antivirus immunity and programmed suicide or dormancy in prokaryotes
- (2012) Kira S Makarova et al. Biology Direct
- Defense Islands in Bacterial and Archaeal Genomes and Prediction of Novel Defense Systems
- (2011) K. S. Makarova et al. JOURNAL OF BACTERIOLOGY
- A reverse transcriptase-related protein mediates phage resistance and polymerizes untemplated DNA in vitro
- (2011) Chen Wang et al. NUCLEIC ACIDS RESEARCH
- A widespread class of reverse transcriptase-related cellular genes
- (2011) E. A. Gladyshev et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Accelerated Profile HMM Searches
- (2011) Sean R. Eddy PLoS Computational Biology
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
- (2010) Morgan N. Price et al. PLoS One
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- Systematic Survey for Novel Types of Prokaryotic Retroelements Based on Gene Neighborhood and Protein Architecture
- (2008) K. K. Kojima et al. MOLECULAR BIOLOGY AND EVOLUTION
- A diversity of uncharacterized reverse transcriptases in bacteria
- (2008) Dawn M. Simon et al. NUCLEIC ACIDS RESEARCH
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started