Interactive Effects of Scion and Rootstock Genotypes on the Root Microbiome of Grapevines (Vitis spp. L.)

Bacterial community dynamics varies with soil management and irrigation practices in grapevines (Vitis vinifera L.)

(2020) Stefanie N. Vink et al.   APPLIED SOIL ECOLOGY

The Fungal and Bacterial Rhizosphere Microbiome Associated With Grapevine Rootstock Genotypes in Mature and Young Vineyards

(2019) Carmen Berlanas et al.   Frontiers in Microbiology

The significance of scion × rootstock interactions

(2019) Peter Clingeleffer et al.   OENO One

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Soil indigenous microbiome and plant genotypes cooperatively modify soybean rhizosphere microbiome assembly

(2019) Fang Liu et al.   BMC MICROBIOLOGY

Purple non‐sulphur bacteria and plant production: benefits for fertilization, stress resistance and the environment

(2019) Myrsini Sakarika et al.   Microbial Biotechnology

Fungal-bacterial diversity and microbiome complexity predict ecosystem functioning

(2019) Cameron Wagg et al.   Nature Communications

From the Vineyard to the Winery: How Microbial Ecology Drives Regional Distinctiveness of Wine

(2019) Di Liu et al.   Frontiers in Microbiology

Scion–rootstock interactions influence the growth and behaviour of the grapevine root system in a heavy clay soil

(2019) F. Ferlito et al.   AUSTRALIAN JOURNAL OF GRAPE AND WINE RESEARCH

Soil microbial species loss affects plant biomass and survival of an introduced bacterial strain, but not inducible plant defences

(2018) Viola Kurm et al.   ANNALS OF BOTANY

Grapevine rootstocks shape underground bacterial microbiome and networking but not potential functionality

(2018) Ramona Marasco et al.   Microbiome

Rootstocks Shape the Rhizobiome: Rhizosphere and Endosphere Bacterial Communities in the Grafted Tomato System

(2018) Ravin Poudel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Influence of resistance breeding in common bean on rhizosphere microbiome composition and function

(2017) Lucas William Mendes et al.   ISME Journal

Plant cultivars imprint the rhizosphere bacterial community composition and association networks

(2017) Yuji Jiang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Using Ecology, Physiology, and Genomics to Understand Host Specificity inXanthomonas

(2016) Marie-Agnès Jacques et al.   Annual Review of Phytopathology

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Associations among Wine Grape Microbiome, Metabolome, and Fermentation Behavior Suggest Microbial Contribution to Regional Wine Characteristics

(2016) Nicholas A. Bokulich et al.   mBio

Host genotype and age shape the leaf and root microbiomes of a wild perennial plant

(2016) Maggie R. Wagner et al.   Nature Communications

Microbial diversity drives multifunctionality in terrestrial ecosystems

(2016) Manuel Delgado-Baquerizo et al.   Nature Communications

Natural variation of root exudates in Arabidopsis thaliana-linking metabolomic and genomic data

(2016) Susann Mönchgesang et al.   Scientific Reports

The response of root-associated bacterial community to the grafting of watermelon

(2015) Ning Ling et al.   PLANT AND SOIL

Microbial Invasions: The Process, Patterns, and Mechanisms

(2015) Cyrus Alexander Mallon et al.   TRENDS IN MICROBIOLOGY

The Soil Microbiome Influences Grapevine-Associated Microbiota

(2015) Iratxe Zarraonaindia et al.   mBio

Improved plant resistance to drought is promoted by the root-associated microbiome as a water stress-dependent trait

(2014) Eleonora Rolli et al.   ENVIRONMENTAL MICROBIOLOGY

Review: the interaction between rootstocks and cultivars (Vitis vinifera L.) to enhance drought tolerance in grapevine

(2013) I. Serra et al.   AUSTRALIAN JOURNAL OF GRAPE AND WINE RESEARCH

The Impact of Beneficial Plant-Associated Microbes on Plant Phenotypic Plasticity

(2013) Chooi-Hua Goh et al.   JOURNAL OF CHEMICAL ECOLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Microbial diversity determines the invasion of soil by a bacterial pathogen

(2012) J. D. van Elsas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

Relating Phylogenetic and Functional Diversity among Denitrifiers and Quantifying their Capacity to Predict Community Functioning

(2012) Joana Falcão Salles et al.   Frontiers in Microbiology

Impact of root exudates and plant defense signaling on bacterial communities in the rhizosphere. A review

(2011) Rogier F. Doornbos et al.   Agronomy for Sustainable Development

Microbially Mediated Plant Functional Traits

(2011) Maren L. Friesen et al.   Annual Review of Ecology Evolution and Systematics

Symbiosis specificity in the legume - rhizobial mutualism

(2011) Dong Wang et al.   CELLULAR MICROBIOLOGY

Intraspecific genotypic richness and relatedness predict the invasibility of microbial communities

(2011) Alexandre Jousset et al.   ISME Journal

Comparative Analysis of Bacterial Communities in a Potato Field as Determined by Pyrosequencing

(2011) Özgül İnceoğlu et al.   PLoS One

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

Seasonal changes of whole root system conductance by a drought-tolerant grape root system

(2010) Maria Mar Alsina et al.   JOURNAL OF EXPERIMENTAL BOTANY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Plant-Growth-Promoting Rhizobacteria

(2009) Ben Lugtenberg et al.   Annual Review of Microbiology

Scion genotype controls biomass allocation and root development in grafted grapevine

(2009) J.-P. TANDONNET et al.   AUSTRALIAN JOURNAL OF GRAPE AND WINE RESEARCH

Associations between species and groups of sites: indices and statistical inference

(2009) Miquel De Cáceres et al.   ECOLOGY

Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere

(2009) Gabriele Berg et al.   FEMS MICROBIOLOGY ECOLOGY

Initial community evenness favours functionality under selective stress

(2009) Lieven Wittebolle et al.   NATURE

The versatility and adaptation of bacteria from the genus Stenotrophomonas

(2009) Robert P. Ryan et al.   NATURE REVIEWS MICROBIOLOGY

Regulation and function of root exudates

(2009) DAYAKAR V. BADRI et al.   PLANT CELL AND ENVIRONMENT