Microbial functional assemblages predicted by the FAPROTAX analysis are impacted by physicochemical properties, but C, N and S cycling genes are not in mangrove soil in the Beibu Gulf, China

Microbial communities in swamps of four mangrove reserves driven by interactions between physicochemical properties and microbe in the North Beibu Gulf, China

(2022) Lu Li et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Can We Use Functional Annotation of Prokaryotic Taxa (FAPROTAX) to Assign the Ecological Functions of Soil Bacteria?

(2021) Chakriya Sansupa et al.   Applied Sciences-Basel

Mitochondrial physiology and responses to elevated hydrogen sulphide in two isogenic lineages of an amphibious mangrove fish

(2021) Keri E. Martin et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Estuarine microbial diversity and nitrogen cycling increase along sand–mud gradients independent of salinity and distance

(2021) Jian Sheng Boey et al.   ENVIRONMENTAL MICROBIOLOGY

16S rRNA gene amplicon-based metagenomic analysis of bacterial communities in the rhizospheres of selected mangrove species from Mida Creek and Gazi Bay, Kenya

(2021) Edith M. Muwawa et al.   PLoS One

Desulfobacterales stimulates nitrate reduction in the mangrove ecosystem of a subtropical gulf

(2021) Shiqing Nie et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Microbiome of permeable sandy substrate in headwater river is shaped by water chemistry rather than grain size and heterogeneity

(2021) Weibo Wang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Insights into the response of mangrove sediment microbiomes to heavy metal pollution: Ecological risk assessment and metagenomics perspectives

(2021) Rinu Madhu Puthusseri et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

Neutral monosaccharides and their relationship to metal contamination in mangrove sediments

(2020) Dandan Duan et al.   CHEMOSPHERE

The responses of soil nitrogen transformation to nitrogen addition are mainly related to the changes in functional gene relative abundance in artificial Pinus tabulaeformis forests

(2020) Jingjing Li et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Nitrifying and Denitrifying Microbial Communities in Centralized and Decentralized Biological Nitrogen Removing Wastewater Treatment Systems

(2020) Sara K. Wigginton et al.   Water

Microbially-driven sulfur cycling microbial communities in different mangrove sediments

(2020) Mingyue Li et al.   CHEMOSPHERE

Exploring bacterial functionality in mangrove sediments and its capability to overcome anthropogenic activity

(2019) Simone Raposo Cotta et al.   MARINE POLLUTION BULLETIN

Community structure and functional diversity of epiphytic bacteria and planktonic bacteria on submerged macrophytes in Caohai Lake, southwest of China

(2019) Dingbo Yan et al.   ANNALS OF MICROBIOLOGY

Functional Distribution of Bacterial Community under Different Land Use Patterns Based on FaProTax Function Prediction

(2019) Shichun Liang et al.   POLISH JOURNAL OF ENVIRONMENTAL STUDIES

Detection of sentinel bacteria in mangrove sediments contaminated with heavy metals.

(2019) J.C. Fernández-Cadena et al.   MARINE POLLUTION BULLETIN

Forest-to-agriculture conversion in Amazon drives soil microbial communities and N-cycle

(2019) Luis Fernando Merloti et al.   SOIL BIOLOGY & BIOCHEMISTRY

Co-inoculation effect of Rhizobium and Achillea millefolium L. oil extracts on growth of common bean (Phaseolus vulgaris L.) and soil microbial-chemical properties

(2019) Veysel Turan et al.   Scientific Reports

Potential bacterial bioindicators of urban pollution in mangroves

(2019) Guillermo G. Torres et al.   ENVIRONMENTAL POLLUTION

A new perspective on functional redundancy and phylogenetic niche conservatism in soil microbial communities

(2019) Yu JIA et al.   PEDOSPHERE

Microbial functional responses to long-term anthropogenic impact in mangrove soils

(2018) Lucélia Cabral et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Promoting the productivity and quality of brinjal aligned with heavy metals immobilization in a wastewater irrigated heavy metal polluted soil with biochar and chitosan

(2018) Veysel Turan et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Microbial Community Composition and Putative Biogeochemical Functions in the Sediment and Water of Tropical Granite Quarry Lakes

(2018) Amit Kumar et al.   MICROBIAL ECOLOGY

Composition and functional diversity of microbial community across a mangrove-inhabited mudflat as revealed by 16S rDNA gene sequences

(2018) Xiaoying Zhang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Breeding eider ducks strongly influence subarctic coastal pond chemistry

(2018) Matthew P. Duda et al.   AQUATIC SCIENCES

QMEC: a tool for high-throughput quantitative assessment of microbial functional potential in C, N, P, and S biogeochemical cycling

(2018) Bangxiao Zheng et al.   Science China-Life Sciences

Comparative mangrove metagenome reveals global prevalence of heavy metals and antibiotic resistome across different ecosystems

(2018) Madangchanok Imchen et al.   Scientific Reports

Spatial and temporal heterogeneity in the structure and function of sediment bacterial communities of a tropical mangrove forest

(2018) Pratiksha Behera et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Biofilm and temperature controls on greenhouse gas (CO2 and CH4) emissions from a Rhizophora mangrove soil (New Caledonia)

(2018) Adrien Jacotot et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Alleviation of nickel toxicity and an improvement in zinc bioavailability in sunflower seed with chitosan and biochar application in pH adjusted nickel contaminated soil

(2017) Veysel Turan et al.   Archives of Agronomy and Soil Science

Comparison of the fecal microbiota of dholes high-throughput Illumina sequencing of the V3–V4 region of the 16S rRNA gene

(2016) Xiaoyang Wu et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Microbial regulation of the soil carbon cycle: evidence from gene–enzyme relationships

(2016) Pankaj Trivedi et al.   ISME Journal

Decoupling function and taxonomy in the global ocean microbiome

(2016) S. Louca et al.   SCIENCE

Effects of polybrominated diphenyl ethers and plant species on nitrification, denitrification and anammox in mangrove soils

(2016) Juan Chen et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Effects of Salinity and Inundation on Microbial Community Structure and Function in a Mangrove Peat Soil

(2016) Lisa G. Chambers et al.   WETLANDS

Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?

(2016) Emily B. Graham et al.   Frontiers in Microbiology

Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data: Fig. 1.

(2015) Kathrin P. Aßhauer et al.   BIOINFORMATICS

Genotypes of ITS region of rRNA inMicrocystis(Cyanobacteria) populations in Erhai Lake (China) and their correlation with eutrophication level

(2015) Gaofei Song et al.   JOURNAL OF BASIC MICROBIOLOGY

Carbon Cycling and Storage in Mangrove Forests

(2014) Daniel M. Alongi   Annual Review of Marine Science

Links between sulphur oxidation and sulphur-oxidising bacteria abundance and diversity in soil microcosms based onsoxBfunctional gene analysis

(2014) Maria Tourna et al.   FEMS MICROBIOLOGY ECOLOGY

Diversity of bacterial community and detection of nirS- and nirK-encoding denitrifying bacteria in sandy intertidal sediments along Laizhou Bay of Bohai Sea, China

(2014) Liping Wang et al.   MARINE POLLUTION BULLETIN

Analysis, Optimization and Verification of Illumina-Generated 16S rRNA Gene Amplicon Surveys

(2014) Michael C. Nelson et al.   PLoS One

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

GeoChip-based analysis of the functional gene diversity and metabolic potential of soil microbial communities of mangroves

(2012) Shijie Bai et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

PANDAseq: paired-end assembler for illumina sequences

(2012) Andre P Masella et al.   BMC BIOINFORMATICS

Abundance of microbial genes associated with nitrogen cycling as indices of biogeochemical process rates across a vegetation gradient in Alaska

(2012) Dorthe Groth Petersen et al.   ENVIRONMENTAL MICROBIOLOGY

Using the RDP Classifier to Predict Taxonomic Novelty and Reduce the Search Space for Finding Novel Organisms

(2012) Yemin Lan et al.   PLoS One

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Microorganisms and their roles in fundamental biogeochemical cycles

(2011) Eugene L Madsen   CURRENT OPINION IN BIOTECHNOLOGY

Fate and effects of anthropogenic chemicals in mangrove ecosystems: A review

(2011) Michael Lewis et al.   ENVIRONMENTAL POLLUTION

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Fiddler crab control of cordgrass primary production in sandy sediments

(2009) C Holdredge et al.   MARINE ECOLOGY PROGRESS SERIES

Anoxygenic photosynthesis modulated Proterozoic oxygen and sustained Earth's middle age

(2009) D. T. Johnston et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sandy sediments as active biogeochemical reactors: compound cycling in the fast lane

(2008) C Rocha   AQUATIC MICROBIAL ECOLOGY