16S rRNA gene amplicon-based metagenomic analysis of bacterial communities in the rhizospheres of selected mangrove species from Mida Creek and Gazi Bay, Kenya

Comparison of bacterial diversity from two mangrove ecosystems from India through metagenomic sequencing

(2020) Vinod Kumar Nathan et al.   Regional Studies in Marine Science

Variations of soil bacterial diversity and metabolic function with tidal flat elevation gradient in an artificial mangrove wetland

(2020) Yichen Yin et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Carbohydrate metabolism genes dominant in a subtropical marine mangrove ecosystem revealed by metagenomics analysis

(2019) Huaxian Zhao et al.   JOURNAL OF MICROBIOLOGY

Community perceptions of the status and threats facing mangroves of Mida Creek, Kenya: Implications for community based management

(2019) Margaret Awuor Owuor et al.   OCEAN & COASTAL MANAGEMENT

Seasonal and vertical variations in the characteristics of the nitrogen-related functional genes in sediments from urban eutrophic lakes

(2019) Xingjia Yin et al.   APPLIED SOIL ECOLOGY

First Insights into the Microbiome of a Mangrove Tree Reveal Significant Differences in Taxonomic and Functional Composition among Plant and Soil Compartments

(2019) Witoon Purahong et al.   Microorganisms

Long-term decomposition captures key steps in microbial breakdown of seagrass litter

(2019) Stacey M. Trevathan-Tackett et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Intertidal zonation affects diversity and functional potentials of bacteria in surface sediments: A case study of the Golden Bay mangrove, China

(2018) Ping Zhu et al.   APPLIED SOIL ECOLOGY

ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R

(2018) Emmanuel Paradis et al.   BIOINFORMATICS

Assessing changes of mangrove forest in a coastal region of southeast China using multi-temporal satellite images

(2018) Min Wang et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Composition and functional diversity of microbial community across a mangrove-inhabited mudflat as revealed by 16S rDNA gene sequences

(2018) Xiaoying Zhang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Metatranscriptomics analysis of mangroves habitats around Mauritius

(2018) Sillma Rampadarath et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

EPA-ng: Massively Parallel Evolutionary Placement of Genetic Sequences

(2018) Pierre Barbera et al.   SYSTEMATIC BIOLOGY

Linking bacterial community composition to soil salinity along environmental gradients

(2018) Kristin M. Rath et al.   ISME Journal

Mangrove Sediment Microbiome: Adaptive Microbial Assemblages and Their Routed Biogeochemical Processes in Yunxiao Mangrove National Nature Reserve, China

(2018) Xiaolan Lin et al.   MICROBIAL ECOLOGY

Investigating monsoon and post-monsoon variabilities of bacterioplankton communities in a mangrove ecosystem

(2017) Anwesha Ghosh et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Desulfosarcina widdelii sp. nov. and Desulfosarcina alkanivorans sp. nov., hydrocarbon-degrading sulfate-reducing bacteria isolated from marine sediment and emended description of the genus Desulfosarcina

(2017) Miho Watanabe et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Searching for signatures across microbial communities: Metagenomic analysis of soil samples from mangrove and other ecosystems

(2017) Madangchanok Imchen et al.   Scientific Reports

Rhizosphere microbiome metagenomics of gray mangroves (Avicennia marina) in the Red Sea

(2016) Hanin Alzubaidy et al.   GENE

Survey of (Meta)genomic Approaches for Understanding Microbial Community Dynamics

(2016) Anukriti Sharma et al.   INDIAN JOURNAL OF MICROBIOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Understanding the creek dynamics and environmental characteristics that determine the distribution of mangrove and salt marsh communities at Nahoon Estuary

(2016) Chanel Geldenhuys et al.   SOUTH AFRICAN JOURNAL OF BOTANY

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Wide Ranging Insect Infestation of the Pioneer Mangrove Sonneratia alba by Two Insect Species along the Kenyan Coast

(2016) Elisha Mrabu Jenoh et al.   PLoS One

Cyanobacteria in mangrove ecosystems

(2015) Danillo Oliveira Alvarenga et al.   BIODIVERSITY AND CONSERVATION

Antimicrobial activities of actinomycetes isolated from unexplored regions of Sundarbans mangrove ecosystem

(2015) Sohan Sengupta et al.   BMC MICROBIOLOGY

Compact graphical representation of phylogenetic data and metadata with GraPhlAn

(2015) Francesco Asnicar et al.   PeerJ

Genomic resolution of linkages in carbon, nitrogen, and sulfur cycling among widespread estuary sediment bacteria

(2015) Brett J Baker et al.   Microbiome

Assessing variation in bacterial composition between the rhizospheres of two mangrove tree species

(2014) Newton C.M. Gomes et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Marinobacterium mangrovicola sp. nov., a marine nitrogen-fixing bacterium isolated from mangrove roots of Rhizophora mangle

(2014) G. Alfaro-Espinoza et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Unifying the analysis of high-throughput sequencing datasets: characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by compositional data analysis

(2014) Andrew D Fernandes et al.   Microbiome

Spatial distribution of nitrogen fixation in methane seep sediment and the role of the ANME archaea

(2013) Anne E. Dekas et al.   ENVIRONMENTAL MICROBIOLOGY

Vegetation and sediment characteristics in an expanding mangrove forest in New Zealand

(2013) Juan Yang et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

A Parsimony Approach to Biological Pathway Reconstruction/Inference for Genomes and Metagenomes

(2009) Yuzhen Ye et al.   PLoS Computational Biology

Assessment of different soil to water ratios (1:1, 1:2.5, 1:5) in soil salinity studies

(2008) Sahriye Sonmez et al.   GEODERMA

Mangrove forests in a peri-urban setting: the case of Mombasa (Kenya)

(2008) Mohamed Omar Said Mohamed et al.   WETLANDS ECOLOGY AND MANAGEMENT