Highly diversified mitochondrial genomes provide new evidence for interordinal relationships in the Arachnida

Comprehensive Species Sampling and Sophisticated Algorithmic Approaches Refute the Monophyly of Arachnida

(2022) Jesús A Ballesteros et al.   MOLECULAR BIOLOGY AND EVOLUTION

WCO-Lite version 1.1: an online nomenclatural catalogue of harvestmen of the world (Arachnida, Opiliones) curated in TaxonWorks

(2021) ADRIANO B. KURY et al.   ZOOTAXA

Taxonomic sampling and rare genomic changes overcome long-branch attraction in the phylogenetic placement of pseudoscorpions

(2021) Andrew Z Ontano et al.   MOLECULAR BIOLOGY AND EVOLUTION

What Is an “Arachnid”? Consensus, Consilience, and Confirmation Bias in the Phylogenetics of Chelicerata

(2021) Prashant P. Sharma et al.   Diversity-Basel

How many long branch orders occur in Chelicerata? Opposing effects of Palpigradi and Opilioacariformes on phylogenetic stability

(2021) Andrew Z. Ontano et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Checklist of the pseudoscorpions (Arachnida: Pseudoscorpiones) of Serbia

(2020) N. B. Ćurčić et al.   ARTHROPODA SELECTA

A Critical Appraisal of the Placement of Xiphosura (Chelicerata) with Account of Known Sources of Phylogenetic Error

(2019) Jesús A Ballesteros et al.   SYSTEMATIC BIOLOGY

Mitochondrial genome reorganization characterizes various lineages of mesostigmatid mites (Acari: Parasitiformes)

(2019) Wei‐Ning Li et al.   ZOOLOGICA SCRIPTA

Mitochondrial genome reorganization provides insights into the relationship between oribatid mites and astigmatid mites (Acari: Sarcoptiformes: Oribatida)

(2019) Wei-Ning Li et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Increasing species sampling in chelicerate genomic-scale datasets provides support for monophyly of Acari and Arachnida

(2019) Jesus Lozano-Fernandez et al.   Nature Communications

The fossil record of spiders revisited: implications for calibrating trees and evidence for a major faunal turnover since the Mesozoic

(2019) Ivan L. F. Magalhaes et al.   BIOLOGICAL REVIEWS

Mitochondrial metagenomics reveals the ancient origin and phylodiversity of soil mites and provides a phylogeny of the Acari

(2019) Paula Arribas et al.   MOLECULAR BIOLOGY AND EVOLUTION

The mitochondrial genomes of sarcoptiform mites: are any transfer RNA genes really lost?

(2018) Xiao-Feng Xue et al.   BMC GENOMICS

Comprehensive phylogeny of acariform mites (Acariformes) provides insights on the origin of the four-legged mites (Eriophyoidea), a long branch

(2018) Pavel B. Klimov et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Mitochondrial Genome Fragmentation Unites the Parasitic Lice of Eutherian Mammals

(2018) Fan Song et al.   SYSTEMATIC BIOLOGY

First global molecular phylogeny and biogeographical analysis of two arachnid orders (Schizomida and Uropygi) supports a tropical Pangean origin and mid-Cretaceous diversification

(2017) Ronald M. Clouse et al.   JOURNAL OF BIOGEOGRAPHY

The phylogenetic position of eriophyoid mites (superfamily Eriophyoidea) in Acariformes inferred from the sequences of mitochondrial genomes and nuclear small subunit ( 18S ) rRNA gene

(2017) Xiao-Feng Xue et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

TNT version 1.5, including a full implementation of phylogenetic morphometrics

(2016) Pablo A. Goloboff et al.   CLADISTICS

Fossil calibrations for the arthropod Tree of Life

(2016) Joanna M. Wolfe et al.   EARTH-SCIENCE REVIEWS

Multiple Lines of Evidence from Mitochondrial Genomes Resolve Phylogenetic Relationships of Parasitic Wasps in Braconidae

(2016) Qian Li et al.   Genome Biology and Evolution

Phylogenomic analyses resolve an ancient trichotomy at the base of Ischyropsalidoidea (Arachnida, Opiliones) despite high levels of gene tree conflict and unequal minority resolution frequencies

(2016) Casey H. Richart et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Origin and higher-level diversification of acariform mites – evidence from nuclear ribosomal genes, extensive taxon sampling, and secondary structure alignment

(2015) A R Pepato et al.   BMC EVOLUTIONARY BIOLOGY

MLGO: phylogeny reconstruction and ancestral inference from gene-order data

(2014) Fei Hu et al.   BMC BIOINFORMATICS

A Paleozoic Stem Group to Mite Harvestmen Revealed through Integration of Phylogenetics and Development

(2014) Russell J. Garwood et al.   CURRENT BIOLOGY

Mitochondrial Genome Rearrangements in the Scleractinia/Corallimorpharia Complex: Implications for Coral Phylogeny

(2014) Mei-Fang Lin et al.   Genome Biology and Evolution

Is It an Ant or a Butterfly? Convergent Evolution in the Mitochondrial Gene Order of Hymenoptera and Lepidoptera

(2014) Massimiliano Babbucci et al.   Genome Biology and Evolution

Phylogenomic Interrogation of Arachnida Reveals Systemic Conflicts in Phylogenetic Signal

(2014) Prashant P. Sharma et al.   MOLECULAR BIOLOGY AND EVOLUTION

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenomics resolves the timing and pattern of insect evolution

(2014) B. Misof et al.   SCIENCE

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Three keys to the radiation of angiosperms into freezing environments

(2013) Amy E. Zanne et al.   NATURE

PhyloBayes MPI: Phylogenetic Reconstruction with Infinite Mixtures of Profiles in a Parallel Environment

(2013) Nicolas Lartillot et al.   SYSTEMATIC BIOLOGY

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Nucleotide Composition of CO1 Sequences in Chelicerata (Arthropoda): Detecting New Mitogenomic Rearrangements

(2012) Juliette Arabi et al.   JOURNAL OF MOLECULAR EVOLUTION

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

(2012) R. Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenetically informative rearrangements in mitochondrial genomes of Coleoptera, and monophyly of aquatic elateriform beetles (Dryopoidea)

(2012) Martijn J.T.N. Timmermans et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Approximate Likelihood Calculation on a Phylogeny for Bayesian Estimation of Divergence Times

(2011) M. d. Reis et al.   MOLECULAR BIOLOGY AND EVOLUTION

Geological history and phylogeny of Chelicerata

(2010) Jason A. Dunlop   ARTHROPOD STRUCTURE & DEVELOPMENT

Phylogenetic position of the acariform mites: sensitivity to homology assessment under total evidence

(2010) Almir R Pepato et al.   BMC EVOLUTIONARY BIOLOGY

Untersuchungen zur Morphologie, Taxonomie und Phylogenie der Chelicerata1 II. Cladogramme und die Entfaltung der Chelicerata

(2010) P. Weygoldt et al.   JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH

Rare genomic changes and mitochondrial sequences provide independent support for congruent relationships among the sea spiders (Arthropoda, Pycnogonida)

(2010) Susan E. Masta et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences

(2010) Jerome C. Regier et al.   NATURE

TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations

(2010) Federico Abascal et al.   NUCLEIC ACIDS RESEARCH

Calibrating the chelicerate clock: a paleontological reply to Jeyaprakash and Hoy

(2009) Jason A. Dunlop et al.   EXPERIMENTAL AND APPLIED ACAROLOGY

Mitochondrial rRNA secondary structures and genome arrangements distinguish chelicerates: Comparisons with a harvestman (Arachnida: Opiliones: Phalangium opilio)

(2009) Susan E. Masta   GENE

TNT, a free program for phylogenetic analysis

(2008) Pablo A. Goloboff et al.   CLADISTICS

Revealing the hidden complexities of mtDNA inheritance

(2008) DANIEL JAMES WHITE et al.   MOLECULAR ECOLOGY

Arachnid relationships based on mitochondrial genomes: Asymmetric nucleotide and amino acid bias affects phylogenetic analyses

(2008) Susan E. Masta et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Beyond linear sequence comparisons: the use of genome-level characters for phylogenetic reconstruction

(2008) J. L Boore et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES