TNT version 1.5, including a full implementation of phylogenetic morphometrics

Phylogenetic inference based on landmark data in 41 empirical data sets

(2016) Santiago A. Catalano et al.   ZOOLOGICA SCRIPTA

Phylogeny, landmark analysis and the use of wing venation to study the evolution of social wasps (Hymenoptera: Vespidae: Vespinae)

(2015) Adrien Perrard et al.   CLADISTICS

Identifying unstable taxa: Efficient implementation of triplet-based measures of stability, and comparison with Phyutility and RogueNaRok

(2015) Pablo A. Goloboff et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

A three-dimensional analysis of the morphological evolution and locomotor behaviour of the carnivoran hind limb

(2014) Alberto Martín-Serra et al.   BMC EVOLUTIONARY BIOLOGY

Computer science and parsimony: a reappraisal, with discussion of methods for poorly structured datasets

(2014) Pablo A. Goloboff   CLADISTICS

First phylogenetic analysis of the family Neriidae (Diptera), with a study on the issue of scaling continuous characters

(2014) Nicolás Mongiardino Koch et al.   CLADISTICS

POY version 5: phylogenetic analysis using dynamic homologies under multiple optimality criteria

(2014) Ward C. Wheeler et al.   CLADISTICS

Hide and vanish: Data sets where the most parsimonious tree is known but hard to find, and their implications for tree search methods

(2014) Pablo A. Goloboff   MOLECULAR PHYLOGENETICS AND EVOLUTION

The More, the Better: The Use of Multiple Landmark Configurations to Solve the Phylogenetic Relationships in Musteloids

(2014) Santiago A. Catalano et al.   SYSTEMATIC BIOLOGY

On the history of the Euclidean Steiner tree problem

(2013) Marcus Brazil et al.   ARCHIVE FOR HISTORY OF EXACT SCIENCES

Extended implied weighting

(2013) Pablo A. Goloboff   CLADISTICS

GB-to-TNT: facilitating creation of matrices from GenBank and diagnosis of results in TNT

(2012) Pablo A. Goloboff et al.   CLADISTICS

Simultaneously Mapping and Superimposing Landmark Configurations with Parsimony as Optimality Criterion

(2012) S. A. Catalano et al.   SYSTEMATIC BIOLOGY

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Phylogenetic morphometrics (I): the use of landmark data in a phylogenetic framework

(2010) Santiago A. Catalano et al.   CLADISTICS

Phylogenetic morphometrics (II): algorithms for landmark optimization

(2010) Pablo A. Goloboff et al.   CLADISTICS

Testing and Quantifying Phylogenetic Signals and Homoplasy in Morphometric Data

(2010) Christian Peter Klingenberg et al.   SYSTEMATIC BIOLOGY

Optimized ancestral state reconstruction using Sankoff parsimony

(2009) José C Clemente et al.   BMC BIOINFORMATICS

Parsimony and explanatory power

(2008) James S. Farris   CLADISTICS

TNT, a free program for phylogenetic analysis

(2008) Pablo A. Goloboff et al.   CLADISTICS

L 1 Generalized Procrustes 2D Shape Alignment

(2008) Rasmus Larsen   JOURNAL OF MATHEMATICAL IMAGING AND VISION

Cladistic analysis of continuous modularized traits provides phylogenetic signals in Homo evolution

(2008) Rolando González-José et al.   NATURE