MLGO: phylogeny reconstruction and ancestral inference from gene-order data

Probabilistic Reconstruction of Ancestral Gene Orders with Insertions and Deletions

(2014) Fei Hu et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

TIBA: a tool for phylogeny inference from rearrangement data with bootstrap analysis

(2012) Y. Lin et al.   BIOINFORMATICS

eGOB: eukaryotic Gene Order Browser

(2011) Marcela Dávila López et al.   BIOINFORMATICS

Reconstructing the architecture of the ancestral amniote genome

(2011) Aïda Ouangraoua et al.   BIOINFORMATICS

DRIMM-Synteny: decomposing genomes into evolutionary conserved segments

(2010) Son K. Pham et al.   BIOINFORMATICS

Ancestral grass karyotype reconstruction unravels new mechanisms of genome shuffling as a source of plant evolution

(2010) F. Murat et al.   GENOME RESEARCH

CYNTENATOR: Progressive Gene Order Alignment of 17 Vertebrate Genomes

(2010) Christian Rödelsperger et al.   PLoS One

webMGR: an online tool for the multiple genome rearrangement problem

(2009) Chi Ho Lin et al.   BIOINFORMATICS

Breakpoint graphs and ancestral genome reconstructions

(2009) M. A. Alekseyev et al.   GENOME RESEARCH

Estimating true evolutionary distances under the DCJ model

(2008) Y. Lin et al.   BIOINFORMATICS

DUPCAR: Reconstructing Contiguous Ancestral Regions with Duplications

(2008) Jian Ma et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

The Trichoplax genome and the nature of placozoans

(2008) Mansi Srivastava et al.   NATURE

The functional repertoires of metazoan genomes

(2008) Chris P. Ponting   NATURE REVIEWS GENETICS