Microbial enrichment and storage for metagenomics of vaginal, skin, and saliva samples

Host DNA depletion efficiency of microbiome DNA enrichment methods in infected tissue samples

(2020) Fatemah Sadeghpour Heravi et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Quantifying Technical Confounders in Microbiome Studies

(2020) Theda U P Bartolomaeus et al.   CARDIOVASCULAR RESEARCH

Lactobacilli Have a Niche in the Human Nose

(2020) Ilke De Boeck et al.   Cell Reports

Long‐term stability of microbiome diversity and composition in fecal samples stored in eNAT medium

(2020) Rebecca R. Young et al.   MicrobiologyOpen

The influence of a swab type on the results of point-of-care tests

(2020) Aleksandra Anna Zasada et al.   AMB Express

Evaluation of fecal DNA extraction protocols for human gut microbiome studies

(2020) Mi Young Lim et al.   BMC MICROBIOLOGY

Oral and Fecal Microbiota in Lynch Syndrome

(2020) Roberto Ferrarese et al.   Journal of Clinical Medicine

Research Techniques Made Simple: Profiling the Skin Microbiota

(2019) Max D. Grogan et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

Effects of sampling strategy and DNA extraction on human skin microbiome investigations

(2019) Rie Dybboe Bjerre et al.   Scientific Reports

The impact of storage buffer, DNA extraction method, and polymerase on microbial analysis

(2018) Luisa K. Hallmaier-Wacker et al.   Scientific Reports

Improving saliva shotgun metagenomics by chemical host DNA depletion

(2018) Clarisse A. Marotz et al.   Microbiome

Synthetic microbe communities provide internal reference standards for metagenome sequencing and analysis

(2018) Simon A. Hardwick et al.   Nature Communications

Citizen science charts two major “stomatotypes” in the oral microbiome of adolescents and reveals links with habits and drinking water composition

(2018) Jesse R. Willis et al.   Microbiome

Evaluating the Information Content of Shallow Shotgun Metagenomics

(2018) Benjamin Hillmann et al.   mSystems

Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies

(2017)   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Shotgun metagenomics, from sampling to analysis

(2017) Christopher Quince et al.   NATURE BIOTECHNOLOGY

Towards standards for human fecal sample processing in metagenomic studies

(2017) Paul I Costea et al.   NATURE BIOTECHNOLOGY

Comparing the Healthy Nose and Nasopharynx Microbiota Reveals Continuity As Well As Niche-Specificity

(2017) Ilke De Boeck et al.   Frontiers in Microbiology

The saliva microbiome profiles are minimally affected by collection method or DNA extraction protocols

(2017) Yenkai Lim et al.   Scientific Reports

The Structure of the Human VaginalStratum Corneumand its Role in Immune Defense

(2014) Deborah J. Anderson et al.   AMERICAN JOURNAL OF REPRODUCTIVE IMMUNOLOGY

Microbial Community Profiling of Human Saliva Using Shotgun Metagenomic Sequencing

(2014) Nur A. Hasan et al.   PLoS One

Comparison and Validation of Some ITS Primer Pairs Useful for Fungal Metabarcoding Studies

(2014) Michiel Op De Beeck et al.   PLoS One

Reference Gene Selection for qPCR Is Dependent on Cell Type Rather than Treatment in Colonic and Vaginal Human Epithelial Cell Lines

(2014) Annette V. Jacobsen et al.   PLoS One

Kraken: ultrafast metagenomic sequence classification using exact alignments

(2014) Derrick E Wood et al.   GENOME BIOLOGY

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: Effective recovery of bacterial and archaeal DNA using mechanical cell lysis

(2010) Anne Salonen et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Vaginal microbiome of reproductive-age women

(2010) J. Ravel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Topographical and Temporal Diversity of the Human Skin Microbiome

(2009) E. A. Grice et al.   SCIENCE

Bacterial Community Variation in Human Body Habitats Across Space and Time

(2009) E. K. Costello et al.   SCIENCE