Improving saliva shotgun metagenomics by chemical host DNA depletion
Published 2018 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Improving saliva shotgun metagenomics by chemical host DNA depletion
Authors
Keywords
Microbiome, Host depletion, Microbial enrichment, Propidium monoazide, Shotgun sequencing, Saliva
Journal
Microbiome
Volume 6, Issue 1, Pages -
Publisher
Springer Nature
Online
2018-02-27
DOI
10.1186/s40168-018-0426-3
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Experimental metagenomics and ribosomal profiling of the human skin microbiome
- (2017) Pamela Ferretti et al. EXPERIMENTAL DERMATOLOGY
- MetaSort untangles metagenome assembly by reducing microbial community complexity
- (2017) Peifeng Ji et al. Nature Communications
- Atropos: specific, sensitive, and speedy trimming of sequencing reads
- (2017) John P. Didion et al. PeerJ
- Elucidation of complexity and prediction of interactions in microbial communities
- (2017) Cristal Zuñiga et al. Microbial Biotechnology
- Effects of Propidium Monoazide (PMA) Treatment on Mycobiome and Bacteriome Analysis of Cystic Fibrosis Airways during Exacerbation
- (2017) Linh Do Ngoc Nguyen et al. PLoS One
- Reducing bias in complex microbial community analysis in shrimp based on propidium monoazide combined with PCR-DGGE
- (2016) Fei Zhao et al. FOOD CONTROL
- Epigenetic Segregation of Microbial Genomes from Complex Samples Using Restriction Endonucleases HpaII and McrB
- (2016) Guohong Liu et al. PLoS One
- Relic DNA is abundant in soil and obscures estimates of soil microbial diversity
- (2016) Paul Carini et al. Nature Microbiology
- Identification of Prosthetic Joint Pathogens Directly in Clinical Specimens by Metagenomic Shotgun Sequencing
- (2016) Matthew Thoendel et al. Open Forum Infectious Diseases
- A flow cytometric approach to quantify biofilms
- (2015) Monique Kerstens et al. FOLIA MICROBIOLOGICA
- MetaPhlAn2 for enhanced metagenomic taxonomic profiling
- (2015) Duy Tin Truong et al. NATURE METHODS
- Cleanroom Maintenance Significantly Reduces Abundance but Not Diversity of Indoor Microbiomes
- (2015) Alexander Mahnert et al. PLoS One
- The effect of propidium monoazide treatment on the measured bacterial composition of clinical samples after the use of a mouthwash
- (2014) R. A. M. Exterkate et al. Clinical Oral Investigations
- Comparative analysis of bacterial community composition in bulk tank raw milk by culture-dependent and culture-independent methods using the viability dye propidium monoazide
- (2014) Mareike Weber et al. JOURNAL OF DAIRY SCIENCE
- Urine Is Not Sterile: Use of Enhanced Urine Culture Techniques To Detect Resident Bacterial Flora in the Adult Female Bladder
- (2013) E. E. Hilt et al. JOURNAL OF CLINICAL MICROBIOLOGY
- A Method for Selectively Enriching Microbial DNA from Contaminating Vertebrate Host DNA
- (2013) George R. Feehery et al. PLoS One
- Snakemake--a scalable bioinformatics workflow engine
- (2012) J. Koster et al. BIOINFORMATICS
- Progress in understanding preferential detection of live cells using viability dyes in combination with DNA amplification
- (2012) Mariana Fittipaldi et al. JOURNAL OF MICROBIOLOGICAL METHODS
- Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
- (2012) Anna Klindworth et al. NUCLEIC ACIDS RESEARCH
- Real-time PCR-based assay to quantify the relative amount of human and mouse tissue present in tumor xenografts
- (2011) Sergio Y Alcoser et al. BMC BIOTECHNOLOGY
- UniFrac: an effective distance metric for microbial community comparison
- (2010) Catherine Lozupone et al. ISME Journal
- Human oral, gut, and plaque microbiota in patients with atherosclerosis
- (2010) O. Koren et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Selective isolation of bacterial DNA from human clinical specimens
- (2007) Hans-Peter Horz et al. JOURNAL OF MICROBIOLOGICAL METHODS
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started