Planting Season Impacts Sugarcane Stem Development, Secondary Metabolite Levels, and Natural Antisense Transcription

Identification of phytocompounds from Houttuynia cordata Thunb. as potential inhibitors for SARS-CoV-2 replication proteins through GC–MS/LC–MS characterization, molecular docking and molecular dynamics simulation

(2021) Sanjib Kumar Das et al.   MOLECULAR DIVERSITY

CsCYT75B1, a Citrus CYTOCHROME P450 Gene, Is Involved in Accumulation of Antioxidant Flavonoids and Induces Drought Tolerance in Transgenic Arabidopsis

(2020) Muhammad Junaid Rao et al.   Antioxidants

Repurposing of FDA-approved antivirals, antibiotics, anthelmintics, antioxidants, and cell protectives against SARS-CoV-2 papain-like protease

(2020) Mahmoud Kandeel et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Virtual screening for functional foods against the main protease of SARS‐CoV‐2

(2020) Jiao Wang et al.   JOURNAL OF FOOD BIOCHEMISTRY

Amino Acid and Carbohydrate Metabolism Are Coordinated to Maintain Energetic Balance during Drought in Sugarcane

(2020) Augusto Lima Diniz et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Polyamine Function in Plants: Metabolism, Regulation on Development, and Roles in Abiotic Stress Responses

(2019) Dandan Chen et al.   Frontiers in Plant Science

Insecticidal Properties of Capsaicinoids and Glucosinolates Extracted from Capsicum chinense and Tropaeolum tuberosum

(2019) José L. Claros Cuadrado et al.   Insects

Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop

(2019) Glaucia Mendes Souza et al.   GigaScience

Exogenous p-Coumaric Acid Improves Salvia hispanica L. Seedling Shoot Growth

(2019) Nkomo et al.   Plants-Basel

Simultaneous determination of myricetrin, quercitrin and afzelin in leaves of Cercis chinensis by a fast and effective method of ionic liquid microextraction coupled with HPLC

(2018) Mengjun Shi et al.   Chemistry Central Journal

Multi‐Omics Factor Analysis—a framework for unsupervised integration of multi‐omics data sets

(2018) Ricard Argelaguet et al.   Molecular Systems Biology

MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis

(2018) Jasmine Chong et al.   NUCLEIC ACIDS RESEARCH

Combined enzymatic and metabolic analysis of grapevine cell responses to elicitors

(2018) Yuko Krzyzaniak et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Unraveling the genetic structure of Brazilian commercial sugarcane cultivars through microsatellite markers

(2018) João Ricardo Vieira Manechini et al.   PLoS One

Metabolite Profiles of Sugarcane Culm Reveal the Relationship Among Metabolism and Axillary Bud Outgrowth in Genetically Related Sugarcane Commercial Cultivars

(2018) Danilo A. Ferreira et al.   Frontiers in Plant Science

Tyrosine biosynthesis, metabolism, and catabolism in plants

(2018) Craig A. Schenck et al.   PHYTOCHEMISTRY

Synthesis versus degradation: directions of amino acid metabolism during Arabidopsis abiotic stress response

(2018) Tatjana M. Hildebrandt   PLANT MOLECULAR BIOLOGY

Transcriptome analysis highlights key differentially expressed genes involved in cellulose and lignin biosynthesis of sugarcane genotypes varying in fiber content

(2018) Lakshmi Kasirajan et al.   Scientific Reports

Silencing a phloretin-specific glycosyltransferase perturbs both general phenylpropanoid biosynthesis and plant development

(2017) Andrew P. Dare et al.   PLANT JOURNAL

Combined transcriptome and metabolome analyses of metformin effects reveal novel links between metabolic networks in steroidogenic systems

(2017) Sameer S. Udhane et al.   Scientific Reports

Mixed Modeling of Yield Components and Brown Rust Resistance in Sugarcane Families

(2016) Thiago W. A. Balsalobre et al.   AGRONOMY JOURNAL

Flavonoids as Potent Scavengers of Hydroxyl Radicals

(2016) Jakub Treml et al.   COMPREHENSIVE REVIEWS IN FOOD SCIENCE AND FOOD SAFETY

Extraction and Purification of Quercitrin, Hyperoside, Rutin, and Afzelin fromZanthoxylum BungeanumMaxim Leaves Using an Aqueous Two-Phase System

(2016) Fengyuan He et al.   JOURNAL OF FOOD SCIENCE

Untargeted Metabolomics Strategies—Challenges and Emerging Directions

(2016) Alexandra C. Schrimpe-Rutledge et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Pharmacological reports about gastroprotective effects of methanolic extract from leaves of Solidago chilensis (Brazilian arnica) and its components quercitrin and afzelin in rodents

(2016) Mariel de Barros et al.   NAUNYN-SCHMIEDEBERGS ARCHIVES OF PHARMACOLOGY

Protocol: a fast, comprehensive and reproducible one-step extraction method for the rapid preparation of polar and semi-polar metabolites, lipids, proteins, starch and cell wall polymers from a single sample

(2016) Mohamed A. Salem et al.   Plant Methods

Co-expression network analysis reveals transcription factors associated to cell wall biosynthesis in sugarcane

(2016) Savio Siqueira Ferreira et al.   PLANT MOLECULAR BIOLOGY

Lignin biosynthesis in sugarcane is affected by low temperature

(2015) Adriana Brombini dos Santos et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Modeling sugarcane ripening as a function of accumulated rainfall in Southern Brazil

(2015) Nilceu P. Cardozo et al.   INTERNATIONAL JOURNAL OF BIOMETEOROLOGY

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Stress-induced Δ1-pyrroline-5-carboxylate synthetase (P5CS) gene confers tolerance to salt stress in transgenic sugarcane

(2014) Julia Tufino Silva Guerzoni et al.   ACTA PHYSIOLOGIAE PLANTARUM

ProbMetab: an R package for Bayesian probabilistic annotation of LC–MS-based metabolomics

(2014) Ricardo R. Silva et al.   BIOINFORMATICS

The Structure of Lignin of Corn Stover and its Changes Induced by Mild Sodium Hydroxide Treatment

(2014) Dou-yong Min et al.   BioResources

Combining metabolomics and transcriptomics to characterize tanshinone biosynthesis in Salvia miltiorrhiza

(2014) Wei Gao et al.   BMC GENOMICS

Antibacterial activity and mode of action of selected glucosinolate hydrolysis products against bacterial pathogens

(2014) Anabela Borges et al.   JOURNAL OF FOOD SCIENCE AND TECHNOLOGY-MYSORE

AntisenseCOOLAIRmediates the coordinated switching of chromatin states atFLCduring vernalization

(2014) Tibor Csorba et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Climatic effects on sugarcane ripening under the influence of cultivars and crop age

(2014) Nilceu Piffer Cardozo et al.   SCIENTIA AGRICOLA

Crop coefficient, water requirements, yield and water use efficiency of sugarcane growth in Brazil

(2013) Vicente de P.R. da Silva et al.   AGRICULTURAL WATER MANAGEMENT

Abiotic stress effects on grapevine (Vitis vinifera L.): Focus on abscisic acid-mediated consequences on secondary metabolism and berry quality

(2013) Alessandra Ferrandino et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Enhancement of oxidative and drought tolerance in Arabidopsis by overaccumulation of antioxidant flavonoids

(2013) Ryo Nakabayashi et al.   PLANT JOURNAL

Lignification in Sugarcane: Biochemical Characterization, Gene Discovery, and Expression Analysis in Two Genotypes Contrasting for Lignin Content

(2013) A. Bottcher et al.   PLANT PHYSIOLOGY

Circadian Rhythms of Sense and Antisense Transcription in Sugarcane, a Highly Polyploid Crop

(2013) Carlos Takeshi Hotta et al.   PLoS One

Plant cell wall lignification and monolignol metabolism

(2013) Yin Wang et al.   Frontiers in Plant Science

Pectin-rich biomass as feedstock for fuel ethanol production

(2012) Meredith C. Edwards et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Composition and Structure of Sugarcane Cell Wall Polysaccharides: Implications for Second-Generation Bioethanol Production

(2012) Amanda P. de Souza et al.   BioEnergy Research

The use of metabolomics to dissect plant responses to abiotic stresses

(2012) Toshihiro Obata et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Identification of sense and antisense transcripts regulated by drought in sugarcane

(2012) Carolina Gimiliani Lembke et al.   PLANT MOLECULAR BIOLOGY

Flavonoids as antioxidants in plants: Location and functional significance

(2012) Giovanni Agati et al.   PLANT SCIENCE

Glucosinolates and isothiocyanates in health and disease

(2012) Albena T. Dinkova-Kostova et al.   TRENDS IN MOLECULAR MEDICINE

Unraveling retrograde signaling pathways: finding candidate signaling molecules via metabolomics and systems biology driven approaches

(2012) Camila Caldana et al.   Frontiers in Plant Science

CAMERA: An Integrated Strategy for Compound Spectra Extraction and Annotation of Liquid Chromatography/Mass Spectrometry Data Sets

(2011) Carsten Kuhl et al.   ANALYTICAL CHEMISTRY

Hybrid proline-rich proteins: novel players in plant cell elongation?

(2011) Lenka Dvořáková et al.   ANNALS OF BOTANY

THE WATER RELATIONS AND IRRIGATION REQUIREMENTS OF COCONUT ( Cocos nucifera): A REVIEW

(2011) M. K. V. CARR   EXPERIMENTAL AGRICULTURE

Os-GIGANTEAConfers Robust Diurnal Rhythms on the Global Transcriptome of Rice in the Field

(2011) Takeshi Izawa et al.   PLANT CELL

Pathway Activity Profiling (PAPi): from the metabolite profile to the metabolic pathway activity

(2010) Raphael B. M. Aggio et al.   BIOINFORMATICS

Differential expression of candidate genes for lignin biosynthesis under drought stress in maize leaves

(2010) Y. Hu et al.   JOURNAL OF APPLIED GENETICS

New Insights into the Shikimate and Aromatic Amino Acids Biosynthesis Pathways in Plants

(2010) Vered Tzin et al.   Molecular Plant

Phenolamides: Bridging polyamines to the phenolic metabolism

(2010) Jean-Etienne Bassard et al.   PHYTOCHEMISTRY

Glucosinolate content and nematicidal activity of Brazilian wild mustard tissues against Meloidogyne incognita in tomato

(2010) Rosângela D. L. Oliveira et al.   PLANT AND SOIL

Identification of Water Deficit Stress Upregulated Genes in Sugarcane

(2010) Gajjeraman Prabu et al.   PLANT MOLECULAR BIOLOGY REPORTER

Transcriptome and metabolome profiling of field-grown transgenic barley lack induced differences but show cultivar-specific variances

(2010) K.-H. Kogel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Sugarcane genes associated with sucrose content

(2009) Flavia S Papini-Terzi et al.   BMC GENOMICS

A natural fungicide for the control of Erysiphe betae and Erysiphe cichoracearum

(2009) Domenico Rongai et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

MetaboAnalyst: a web server for metabolomic data analysis and interpretation

(2009) J. Xia et al.   NUCLEIC ACIDS RESEARCH

A Novel Polyamine Acyltransferase Responsible for the Accumulation of Spermidine Conjugates in Arabidopsis Seed

(2009) J. Luo et al.   PLANT CELL

Differences in the responses of stem diameter and pod thickness to drought stress during the grain filling stage in soybean plants

(2008) Yoshiyuki Ohashi et al.   ACTA PHYSIOLOGIAE PLANTARUM