Protocol: a fast, comprehensive and reproducible one-step extraction method for the rapid preparation of polar and semi-polar metabolites, lipids, proteins, starch and cell wall polymers from a single sample

Optimization of metabolite extraction of human vein tissue for ultra performance liquid chromatography-mass spectrometry and nuclear magnetic resonance-based untargeted metabolic profiling

(2015) Muzaffar A. Anwar et al.   ANALYST

Metabolomics – the complementary field in systems biology: a review on obesity and type 2 diabetes

(2015) Mohamad Hafizi Abu Bakar et al.   Molecular BioSystems

Organization and Evolution of Brain Lipidome Revealed by Large-Scale Analysis of Human, Chimpanzee, Macaque, and Mouse Tissues

(2015) Katarzyna Bozek et al.   NEURON

Central role ofFaGAMYBin the transition of the strawberry receptacle from development to ripening

(2015) José G. Vallarino et al.   NEW PHYTOLOGIST

Global Analysis of the Role of Autophagy in Cellular Metabolism and Energy Homeostasis in Arabidopsis Seedlings under Carbon Starvation

(2015) Tamar Avin-Wittenberg et al.   PLANT CELL

Integration of transcriptomics and metabolomics data specifies the metabolic response of Chlamydomonas to rapamycin treatment

(2015) Sabrina Kleessen et al.   PLANT JOURNAL

Liquid chromatography high-resolution mass spectrometry for fatty acid profiling

(2015) Mariusz A. Bromke et al.   PLANT JOURNAL

FAX1, a Novel Membrane Protein Mediating Plastid Fatty Acid Export

(2015) Nannan Li et al.   PLOS BIOLOGY

UPLC-MS analysis of Chlamydomonas reinhardtii and Scenedesmus obliquus lipid extracts and their possible metabolic roles

(2014) Durlubh Kumar Sharma et al.   JOURNAL OF APPLIED PHYCOLOGY

Diacylglycerol Activates the Light-Dependent Channel TRP in the Photosensitive Microvilli of Drosophila melanogaster Photoreceptors

(2014) R. Delgado et al.   JOURNAL OF NEUROSCIENCE

Disruption of Mediator rescues the stunted growth of a lignin-deficient Arabidopsis mutant

(2014) Nicholas D. Bonawitz et al.   NATURE

Uric Acid Accumulation in anArabidopsisUrate Oxidase Mutant Impairs Seedling Establishment by Blocking Peroxisome Maintenance

(2014) Oliver K. Hauck et al.   PLANT CELL

Systems-Wide Analysis of Acclimation Responses to Long-Term Heat Stress and Recovery in the Photosynthetic Model OrganismChlamydomonas reinhardtii

(2014) Dorothea Hemme et al.   PLANT CELL

A universal protocol for the combined isolation of metabolites, DNA, long RNAs, small RNAs, and proteins from plants and microorganisms

(2014) Luis Valledor et al.   PLANT JOURNAL

Neanderthal ancestry drives evolution of lipid catabolism in contemporary Europeans

(2014) Ekaterina E. Khrameeva et al.   Nature Communications

Exceptional Evolutionary Divergence of Human Muscle and Brain Metabolomes Parallels Human Cognitive and Physical Uniqueness

(2014) Katarzyna Bozek et al.   PLOS BIOLOGY

Determination Methods for Biologically Active Compounds by Ultra-Performance Liquid Chromatography Coupled with Mass Spectrometry: Application to the Analyses of Pharmaceuticals, Foods, Plants, Environments, Metabonomics, and Metabolomics

(2013) T. Toyo'oka   JOURNAL OF CHROMATOGRAPHIC SCIENCE

Metabolite turns master regulator

(2013) Joshua D. Rabinowitz et al.   NATURE

Comprehensive Dissection of Spatiotemporal Metabolic Shifts in Primary, Secondary, and Lipid Metabolism during Developmental Senescence in Arabidopsis

(2013) M. Watanabe et al.   PLANT PHYSIOLOGY

Metabolic Analysis of Adaptation to Short-Term Changes in Culture Conditions of the Marine Diatom Thalassiosira pseudonana

(2013) Mariusz A. Bromke et al.   PLoS One

Determining the polysaccharide composition of plant cell walls

(2012) Filomena A Pettolino et al.   Nature Protocols

Proteaceae from severely phosphorus-impoverished soils extensively replace phospholipids with galactolipids and sulfolipids during leaf development to achieve a high photosynthetic phosphorus-use-efficiency

(2012) Hans Lambers et al.   NEW PHYTOLOGIST

Differential remodeling of the lipidome during cold acclimation in natural accessions ofArabidopsis thaliana

(2012) Thomas Degenkolbe et al.   PLANT JOURNAL

High-resolution plant metabolomics: from mass spectral features to metabolites and from whole-cell analysis to subcellular metabolite distributions

(2012) Stephan Kueger et al.   PLANT JOURNAL

Systemic analysis of inducible target of rapamycin mutants reveal a general metabolic switch controlling growth inArabidopsis thaliana

(2012) Camila Caldana et al.   PLANT JOURNAL

Modern analytical techniques in metabolomics analysis

(2011) Aihua Zhang et al.   ANALYST

Quantitative, High-Resolution Proteomics for Data-Driven Systems Biology

(2011) Jürgen Cox et al.   Annual Review of Biochemistry

Mass spectrometry-based proteomics for systems biology

(2011) Eduard Sabidó et al.   CURRENT OPINION IN BIOTECHNOLOGY

Demethylation of oligogalacturonides by FaPE1 in the fruits of the wild strawberry Fragaria vesca triggers metabolic and transcriptional changes associated with defence and development of the fruit

(2011) Sonia Osorio et al.   JOURNAL OF EXPERIMENTAL BOTANY

Quantification of sterol lipids in plants by quadrupole time-of-flight mass spectrometry

(2011) Vera Wewer et al.   JOURNAL OF LIPID RESEARCH

Corn hybrids display lower metabolite variability and complex metabolite inheritance patterns

(2011) Jan Lisec et al.   PLANT JOURNAL

Elemental formula annotation of polar and lipophilic metabolites using13C,15N and34S isotope labelling, in combination with high-resolution mass spectrometry

(2011) Patrick Giavalisco et al.   PLANT JOURNAL

Toward the Storage Metabolome: Profiling the Barley Vacuole

(2011) T. Tohge et al.   PLANT PHYSIOLOGY

Ultra Performance Liquid Chromatography and High Resolution Mass Spectrometry for the Analysis of Plant Lipids

(2011) Jan Hummel et al.   Frontiers in Plant Science

Advances in Mass Spectrometry for Lipidomics

(2010) Stephen J. Blanksby et al.   Annual Review of Analytical Chemistry

Evaluation of extraction processes for intracellular metabolite profiling of mammalian cells: matching extraction approaches to cell type and metabolite targets

(2010) Christopher A. Sellick et al.   Metabolomics

Selective enrichment of sialic acid–containing glycopeptides using titanium dioxide chromatography with analysis by HILIC and mass spectrometry

(2010) Giuseppe Palmisano et al.   Nature Protocols

Sinapate esters in brassicaceous plants: biochemistry, molecular biology, evolution and metabolic engineering

(2010) Carsten Milkowski et al.   PLANTA

Comprehensive Compositional Analysis of Plant Cell Walls (Lignocellulosic biomass) Part II: Carbohydrates

(2010) Cliff E. Foster et al.   Jove-Journal of Visualized Experiments

Comprehensive Compositional Analysis of Plant Cell Walls (Lignocellulosic biomass) Part I: Lignin

(2010) Cliff E. Foster et al.   Jove-Journal of Visualized Experiments

Metabolomics for Functional Genomics, Systems Biology, and Biotechnology

(2009) Kazuki Saito et al.   Annual Review of Plant Biology

TargetSearch - a Bioconductor package for the efficient preprocessing of GC-MS metabolite profiling data

(2009) Álvaro Cuadros-Inostroza et al.   BMC BIOINFORMATICS

Universal sample preparation method for proteome analysis

(2009) Jacek R Wiśniewski et al.   NATURE METHODS

Rapid analysis of poplar lignin monomer composition by a streamlined thioacidolysis procedure and near-infrared reflectance-based prediction modeling

(2009) Andrew R. Robinson et al.   PLANT JOURNAL

PROTEOMER: A workflow-optimized laboratory information management system for 2-D electrophoresis-centered proteomics

(2009) Grit Nebrich et al.   PROTEOMICS

Lipid extraction by methyl-tert-butyl ether for high-throughput lipidomics

(2008) Vitali Matyash et al.   JOURNAL OF LIPID RESEARCH

Definition ofArabidopsisSterol-rich Membrane Microdomains by Differential Treatment with Methyl-β-cyclodextrin and Quantitative Proteomics

(2008) Sylwia Kierszniowska et al.   MOLECULAR & CELLULAR PROTEOMICS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS