- Home
- Publications
- Publication Search
- Publication Details
Title
Underwater CAM photosynthesis elucidated by Isoetes genome
Authors
Keywords
-
Journal
Nature Communications
Volume 12, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2021-11-05
DOI
10.1038/s41467-021-26644-7
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Chronoculture, harnessing the circadian clock to improve crop yield and sustainability
- (2021) Gareth Steed et al. SCIENCE
- The evolution of the phenylpropanoid pathway entailed pronounced radiations and divergences of enzyme families
- (2021) Sophie Vries et al. PLANT JOURNAL
- IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
- (2020) Bui Quang Minh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Changes in ambient temperature are the prevailing cue in determining Brachypodium distachyon diurnal gene regulation
- (2020) Kirk J‐M. MacKinnon et al. NEW PHYTOLOGIST
- Inferring putative ancient whole-genome duplications in the 1000 Plants (1KP) initiative: access to gene family phylogenies and age distributions
- (2020) Zheng Li et al. GigaScience
- The Penium margaritaceum Genome: Hallmarks of the Origins of Land Plants
- (2020) Chen Jiao et al. CELL
- Heat stress response in the closest algal relatives of land plants reveals conserved stress signaling circuits
- (2020) Jan Vries et al. PLANT JOURNAL
- Phylogenomics indicates the “living fossil” Isoetes diversified in the Cenozoic
- (2020) Daniel Wood et al. PLoS One
- CO2 starvation experiments provide support for the carbon-limited hypothesis on the evolution of CAM-like behaviour in Isoëtes
- (2020) Jacob S Suissa et al. ANNALS OF BOTANY
- Genome and time-of-day transcriptome of Wolffia australiana link morphological minimization with gene loss and less growth control
- (2020) Todd P. Michael et al. GENOME RESEARCH
- Gene expression data support the hypothesis that Isoetes rootlets are true roots and not modified leaves
- (2020) Alexander J. Hetherington et al. Scientific Reports
- Altered Gene Regulatory Networks Are Associated With the Transition From C3 to Crassulacean Acid Metabolism in Erycina (Oncidiinae: Orchidaceae)
- (2019) Karolina Heyduk et al. Frontiers in Plant Science
- Kingdom-wide comparison reveals the evolution of diurnal gene expression in Archaeplastida
- (2019) Camilla Ferrari et al. Nature Communications
- Shared expression of Crassulacean acid metabolism (CAM) genes predates the origin of CAM in the genus Yucca
- (2019) Karolina Heyduk et al. JOURNAL OF EXPERIMENTAL BOTANY
- Inference of Ancient Whole-Genome Duplications and the Evolution of Gene Duplication and Loss Rates
- (2019) Arthur Zwaenepoel et al. MOLECULAR BIOLOGY AND EVOLUTION
- A phenol/chloroform-free method to extract nucleic acids from recalcitrant, woody tropical species for gene expression and sequencing
- (2019) François F. Barbier et al. Plant Methods
- Time of day and network reprogramming during drought induced CAM photosynthesis in Sedum album
- (2019) Ching Man Wai et al. PLoS Genetics
- Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
- (2019) Daehwan Kim et al. NATURE BIOTECHNOLOGY
- Genomes of Subaerial Zygnematophyceae Provide Insights into Land Plant Evolution
- (2019) Shifeng Cheng et al. CELL
- The water lily genome and the early evolution of flowering plants
- (2019) Liangsheng Zhang et al. NATURE
- A pseudomolecule‐scale genome assembly of the liverwort Marchantia polymorpha
- (2019) Seydina I. Diop et al. PLANT JOURNAL
- ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
- (2018) Emmanuel Paradis et al. BIOINFORMATICS
- The Chara Genome: Secondary Complexity and Implications for Plant Terrestrialization
- (2018) Tomoaki Nishiyama et al. CELL
- A well-resolved fern nuclear phylogeny reveals the evolution history of numerous transcription factor families
- (2018) Xinping Qi et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Genome Analysis of the Ancient Tracheophyte Selaginella tamariscina Reveals Evolutionary Features Relevant to the Acquisition of Desiccation Tolerance
- (2018) Zhichao Xu et al. Molecular Plant
- The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution
- (2018) Daniel Lang et al. PLANT JOURNAL
- Embryophyte stress signaling evolved in the algal progenitors of land plants
- (2018) Jan de Vries et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The timescale of early land plant evolution
- (2018) Jennifer L. Morris et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Extreme haplotype variation in the desiccation-tolerant clubmoss Selaginella lepidophylla
- (2018) Robert VanBuren et al. Nature Communications
- Insights into the Evolution of Multicellularity from the Sea Lettuce Genome
- (2018) Olivier De Clerck et al. CURRENT BIOLOGY
- wgd—simple command line tools for the analysis of ancient whole-genome duplications
- (2018) Arthur Zwaenepoel et al. BIOINFORMATICS
- Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies
- (2018) Michael J. Roach et al. BMC BIOINFORMATICS
- LR_Gapcloser: a tiling path-based gap closer that uses long reads to complete genome assembly
- (2018) Gui-Cai Xu et al. GigaScience
- Fast and accurate de novo genome assembly from long uncorrected reads
- (2017) Robert Vaser et al. GENOME RESEARCH
- Transcript profiling indicates a widespread role for bacterial-type phosphoenolpyruvate carboxylase in malate-accumulating sink tissues
- (2017) Michael K Y Ting et al. JOURNAL OF EXPERIMENTAL BOTANY
- Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper
- (2017) Jaime Huerta-Cepas et al. MOLECULAR BIOLOGY AND EVOLUTION
- UFBoot2: Improving the Ultrafast Bootstrap Approximation
- (2017) Diep Thi Hoang et al. MOLECULAR BIOLOGY AND EVOLUTION
- ModelFinder: fast model selection for accurate phylogenetic estimates
- (2017) Subha Kalyaanamoorthy et al. NATURE METHODS
- How Embryophytic is the Biosynthesis of Phenylpropanoids and their Derivatives in Streptophyte Algae?
- (2017) Jan de Vries et al. PLANT AND CELL PHYSIOLOGY
- LTR_retriever: A Highly Accurate and Sensitive Program for Identification of Long Terminal Repeat Retrotransposons
- (2017) Shujun Ou et al. PLANT PHYSIOLOGY
- The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism
- (2017) Xiaohan Yang et al. Nature Communications
- Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences
- (2016) Heng Li BIOINFORMATICS
- Disentangling the Phylogeny of Isoetes (Isoetales), Using Nuclear and Plastid Data
- (2016) Eva Larsén et al. INTERNATIONAL JOURNAL OF PLANT SCIENCES
- Evolutionary history of PEPC genes in green plants: Implications for the evolution of CAM in orchids
- (2016) Hua Deng et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea
- (2016) Jeanine L. Olsen et al. NATURE
- Evaluating the spore genome sizes of ferns and lycophytes: a flow cytometry approach
- (2016) Li-Yaung Kuo et al. NEW PHYTOLOGIST
- Origin and mechanism of crassulacean acid metabolism in orchids as implied by comparative transcriptomics and genomics of the carbon fixation pathway
- (2016) Liangsheng Zhang et al. PLANT JOURNAL
- A community-derived classification for extant lycophytes and ferns
- (2016) Journal of Systematics and Evolution
- StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
- (2015) Mihaela Pertea et al. NATURE BIOTECHNOLOGY
- The pineapple genome and the evolution of CAM photosynthesis
- (2015) Ray Ming et al. NATURE GENETICS
- limma powers differential expression analyses for RNA-sequencing and microarray studies
- (2015) Matthew E. Ritchie et al. NUCLEIC ACIDS RESEARCH
- Comparative Transcriptome Analysis of Isoetes Sinensis Under Terrestrial and Submerged Conditions
- (2015) Tao Yang et al. PLANT MOLECULAR BIOLOGY REPORTER
- Conservation of ethylene as a plant hormone over 450 million years of evolution
- (2015) Chuanli Ju et al. Nature Plants
- SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads
- (2014) Y. Xie et al. BIOINFORMATICS
- An improved genome release (version Mt4.0) for the model legume Medicago truncatula
- (2014) Haibao Tang et al. BMC GENOMICS
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- The genome sequence of the orchid Phalaenopsis equestris
- (2014) Jing Cai et al. NATURE GENETICS
- Structural Studies of Cinnamoyl-CoA Reductase and Cinnamyl-Alcohol Dehydrogenase, Key Enzymes of Monolignol Biosynthesis
- (2014) H. Pan et al. PLANT CELL
- Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
- (2014) Bruce J. Walker et al. PLoS One
- DNA-binding specificities of plant transcription factors and their potential to define target genes
- (2014) José M. Franco-Zorrilla et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Spirodela polyrhiza genome reveals insights into its neotenous reduction fast growth and aquatic lifestyle
- (2014) W. Wang et al. Nature Communications
- Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation
- (2014) Koichi Hori et al. Nature Communications
- The tobacco genome sequence and its comparison with those of tomato and potato
- (2014) Nicolas Sierro et al. Nature Communications
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- The Norway spruce genome sequence and conifer genome evolution
- (2013) Björn Nystedt et al. NATURE
- Architecture and evolution of a minute plant genome
- (2013) Enrique Ibarra-Laclette et al. NATURE
- The Capsella rubella genome and the genomic consequences of rapid mating system evolution
- (2013) Tanja Slotte et al. NATURE GENETICS
- The Amborella Genome and the Evolution of Flowering Plants
- (2013) et al. SCIENCE
- Lateral Gene Transfer from the Dead
- (2013) Gergely J. Szöllősi et al. SYSTEMATIC BIOLOGY
- Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.)
- (2013) Ray Ming et al. GENOME BIOLOGY
- MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
- (2012) Fredrik Ronquist et al. SYSTEMATIC BIOLOGY
- Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage
- (2012) Hervé Moreau et al. GENOME BIOLOGY
- The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation
- (2012) Guillaume Blanc et al. GENOME BIOLOGY
- A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
- (2011) Guillaume Marçais et al. BIOINFORMATICS
- A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
- (2011) H. Li BIOINFORMATICS
- FIMO: scanning for occurrences of a given motif
- (2011) Charles E. Grant et al. BIOINFORMATICS
- MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects
- (2011) Carson Holt et al. BMC BIOINFORMATICS
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- Phytozome: a comparative platform for green plant genomics
- (2011) David M. Goodstein et al. NUCLEIC ACIDS RESEARCH
- The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools
- (2011) Philippe Lamesch et al. NUCLEIC ACIDS RESEARCH
- Revisiting the DNA C-values of the genome size-standards used in plant flow cytometry to choose the “best primary standards”
- (2011) Milene Miranda Praça-Fontes et al. PLANT CELL REPORTS
- Global Profiling of Rice and Poplar Transcriptomes Highlights Key Conserved Circadian-Controlled Pathways and cis-Regulatory Modules
- (2011) Sergei A. Filichkin et al. PLoS One
- The Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants
- (2011) J. A. Banks et al. SCIENCE
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data
- (2010) Robert C McLeay et al. BMC BIOINFORMATICS
- Does the core circadian clock in the moss Physcomitrella patens (Bryophyta) comprise a single loop?
- (2010) Karl Holm et al. BMC PLANT BIOLOGY
- EvoPipes.net: Bioinformatic Tools for Ecological and Evolutionary Genomics
- (2010) Michael S. Barker et al. Evolutionary Bioinformatics
- Genome sequencing and analysis of the model grass Brachypodium distachyon
- (2010) John P. Vogel et al. NATURE
- Genome sequence of the palaeopolyploid soybean
- (2010) Jeremy Schmutz et al. NATURE
- The genome of Theobroma cacao
- (2010) Xavier Argout et al. NATURE GENETICS
- Crystal Structures of aPopulus tomentosa4-Coumarate:CoA Ligase Shed Light on Its Enzymatic Mechanisms
- (2010) Yonglin Hu et al. PLANT CELL
- Structure-Function Analyses of a Caffeic AcidO-Methyltransferase from Perennial Ryegrass Reveal the Molecular Basis for Substrate Preference
- (2010) Gordon V. Louie et al. PLANT CELL
- Genomic Analysis of Organismal Complexity in the Multicellular Green Alga Volvox carteri
- (2010) S. E. Prochnik et al. SCIENCE
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- Clocks in the Green Lineage: Comparative Functional Analysis of the Circadian Architecture of the Picoeukaryote Ostreococcus
- (2009) F. Corellou et al. PLANT CELL
- Green Evolution and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes Micromonas
- (2009) A. Z. Worden et al. SCIENCE
- Multiple Paleopolyploidizations during the Evolution of the Compositae Reveal Parallel Patterns of Duplicate Gene Retention after Millions of Years
- (2008) M. S. Barker et al. MOLECULAR BIOLOGY AND EVOLUTION
- Network Discovery Pipeline Elucidates Conserved Time-of-Day–Specific cis-Regulatory Modules
- (2008) Todd P. Michael et al. PLoS Genetics
- Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis
- (2008) A. Loytynoja et al. SCIENCE
- A Morning-Specific Phytohormone Gene Expression Program underlying Rhythmic Plant Growth
- (2008) Todd P Michael et al. PLOS BIOLOGY
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started