A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
Published 2011 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
Authors
Keywords
-
Journal
BIOINFORMATICS
Volume 27, Issue 21, Pages 2987-2993
Publisher
Oxford University Press (OUP)
Online
2011-09-09
DOI
10.1093/bioinformatics/btr509
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Improving SNP discovery by base alignment quality
- (2011) H. Li BIOINFORMATICS
- The variant call format and VCFtools
- (2011) P. Danecek et al. BIOINFORMATICS
- Estimation of allele frequency and association mapping using next-generation sequencing data
- (2011) Su Kim et al. BMC BIOINFORMATICS
- Low-coverage sequencing: Implications for design of complex trait association studies
- (2011) Y. Li et al. GENOME RESEARCH
- Accurate and comprehensive sequencing of personal genomes
- (2011) S. S. Ajay et al. GENOME RESEARCH
- Variation in genome-wide mutation rates within and between human families
- (2011) Donald F Conrad et al. NATURE GENETICS
- A framework for variation discovery and genotyping using next-generation DNA sequencing data
- (2011) Mark A DePristo et al. NATURE GENETICS
- Genotype and SNP calling from next-generation sequencing data
- (2011) Rasmus Nielsen et al. NATURE REVIEWS GENETICS
- Sequence-specific error profile of Illumina sequencers
- (2011) Kensuke Nakamura et al. NUCLEIC ACIDS RESEARCH
- SeqEM: an adaptive genotype-calling approach for next-generation sequencing studies
- (2010) E. R. Martin et al. BIOINFORMATICS
- Fast and accurate long-read alignment with Burrows–Wheeler transform
- (2010) Heng Li et al. BIOINFORMATICS
- Application of second-generation sequencing to cancer genomics
- (2010) K. Robison BRIEFINGS IN BIOINFORMATICS
- Design of association studies with pooled or un-pooled next-generation sequencing data
- (2010) Su Yeon Kim et al. GENETIC EPIDEMIOLOGY
- MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes
- (2010) Yun Li et al. GENETIC EPIDEMIOLOGY
- SNP detection and genotyping from low-coverage sequencing data on multiple diploid samples
- (2010) S. Q. Le et al. GENOME RESEARCH
- A map of human genome variation from population-scale sequencing
- (2010) Richard M. Durbin et al. NATURE
- Resequencing of 200 human exomes identifies an excess of low-frequency non-synonymous coding variants
- (2010) Yingrui Li et al. NATURE GENETICS
- Analysis of Genetic Inheritance in a Family Quartet by Whole-Genome Sequencing
- (2010) J. C. Roach et al. SCIENCE
- Sequencing of 50 Human Exomes Reveals Adaptation to High Altitude
- (2010) X. Yi et al. SCIENCE
- Simultaneous Genotype Calling and Haplotype Phasing Improves Genotype Accuracy and Reduces False-Positive Associations for Genome-wide Association Studies
- (2009) Brian L. Browning et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Genotype Imputation
- (2009) Yun Li et al. Annual Review of Genomics and Human Genetics
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution
- (2009) Sohrab P. Shah et al. NATURE
- A small-cell lung cancer genome with complex signatures of tobacco exposure
- (2009) Erin D. Pleasance et al. NATURE
- A comprehensive catalogue of somatic mutations from a human cancer genome
- (2009) Erin D. Pleasance et al. NATURE
- Recurring Mutations Found by Sequencing an Acute Myeloid Leukemia Genome
- (2009) Elaine R. Mardis et al. NEW ENGLAND JOURNAL OF MEDICINE
- Human Genome Sequencing Using Unchained Base Reads on Self-Assembling DNA Nanoarrays
- (2009) R. Drmanac et al. SCIENCE
- A Flexible and Accurate Genotype Imputation Method for the Next Generation of Genome-Wide Association Studies
- (2009) Bryan N. Howie et al. PLoS Genetics
- Mapping short DNA sequencing reads and calling variants using mapping quality scores
- (2008) H. Li et al. GENOME RESEARCH
- Enredo and Pecan: Genome-wide mammalian consistency-based multiple alignment with paralogs
- (2008) B. Paten et al. GENOME RESEARCH
- DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome
- (2008) Timothy J. Ley et al. NATURE
- Accurate whole human genome sequencing using reversible terminator chemistry
- (2008) David R. Bentley et al. NATURE
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now