Inferring putative ancient whole-genome duplications in the 1000 Plants (1KP) initiative: access to gene family phylogenies and age distributions
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Title
Inferring putative ancient whole-genome duplications in the 1000 Plants (1KP) initiative: access to gene family phylogenies and age distributions
Authors
Keywords
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Journal
GigaScience
Volume 9, Issue 2, Pages -
Publisher
Oxford University Press (OUP)
Online
2020-02-11
DOI
10.1093/gigascience/giaa004
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Note: Only part of the references are listed.- Inferring putative ancient whole-genome duplications in the 1000 Plants (1KP) initiative: access to gene family phylogenies and age distributions
- (2020) Zheng Li et al. GigaScience
- Inference of Ancient Whole-Genome Duplications and the Evolution of Gene Duplication and Loss Rates
- (2019) Arthur Zwaenepoel et al. MOLECULAR BIOLOGY AND EVOLUTION
- Access to RNA-sequencing data from 1,173 plant species: The 1000 Plant transcriptomes initiative (1KP)
- (2019) Eric J Carpenter et al. GigaScience
- Multiple large-scale gene and genome duplications during the evolution of hexapods
- (2018) Zheng Li et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Chrysanthemum nankingense Genome Provides Insights into the Evolution and Diversification of Chrysanthemum Flowers and Medicinal Traits
- (2018) Chi Song et al. Molecular Plant
- The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution
- (2017) Hélène Badouin et al. NATURE
- Disparity, diversity, and duplications in the Caryophyllales
- (2017) Stephen A. Smith et al. NEW PHYTOLOGIST
- Genome assembly with in vitro proximity ligation data and whole-genome triplication in lettuce
- (2017) Sebastian Reyes-Chin-Wo et al. Nature Communications
- Revisiting ancestral polyploidy in plants
- (2017) Colin Ruprecht et al. Science Advances
- Evidence for an ancient whole genome duplication in the cycad lineage
- (2017) Danielle Roodt et al. PLoS One
- Most Compositae (Asteraceae) are descendants of a paleohexaploid and all share a paleotetraploid ancestor with the Calyceraceae
- (2016) Michael S. Barker et al. AMERICAN JOURNAL OF BOTANY
- Spreading Winge and flying high: The evolutionary importance of polyploidy after a century of study
- (2016) Michael S. Barker et al. AMERICAN JOURNAL OF BOTANY
- Evaluating and Characterizing Ancient Whole-Genome Duplications in Plants with Gene Count Data
- (2016) George P. Tiley et al. Genome Biology and Evolution
- Multiple Polyploidization Events across Asteraceae with Two Nested Events in the Early History Revealed by Nuclear Phylogenomics
- (2016) Chien-Hsun Huang et al. MOLECULAR BIOLOGY AND EVOLUTION
- The wondrous cycles of polyploidy in plants
- (2015) Jonathan F. Wendel AMERICAN JOURNAL OF BOTANY
- Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants
- (2015) Stephen A Smith et al. BMC EVOLUTIONARY BIOLOGY
- Dissecting Molecular Evolution in the Highly Diverse Plant Clade Caryophyllales Using Transcriptome Sequencing
- (2015) Ya Yang et al. MOLECULAR BIOLOGY AND EVOLUTION
- Early genome duplications in conifers and other seed plants
- (2015) Z. Li et al. Science Advances
- mixtools: AnRPackage for Analyzing Finite Mixture Models
- (2015) Tatiana Benaglia et al. Journal of Statistical Software
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- Multiple Polyploidy Events in the Early Radiation of Nodulating and Nonnodulating Legumes
- (2014) Steven B. Cannon et al. MOLECULAR BIOLOGY AND EVOLUTION
- The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates
- (2014) Camille Berthelot et al. Nature Communications
- GenPhyloData: realistic simulation of gene family evolution
- (2013) Joel Sjöstrand et al. BMC BIOINFORMATICS
- Detecting and Locating Whole Genome Duplications on a Phylogeny: A Probabilistic Approach
- (2013) Charles-Elie Rabier et al. MOLECULAR BIOLOGY AND EVOLUTION
- Inference of Genome Duplications from Age Distributions Revisited
- (2012) Kevin Vanneste et al. MOLECULAR BIOLOGY AND EVOLUTION
- Gamma Paleohexaploidy in the Stem Lineage of Core Eudicots: Significance for MADS-Box Gene and Species Diversification
- (2012) Dries Vekemans et al. MOLECULAR BIOLOGY AND EVOLUTION
- A genome triplication associated with early diversification of the core eudicots
- (2012) Yuannian Jiao et al. GENOME BIOLOGY
- Ancestral polyploidy in seed plants and angiosperms
- (2011) Yuannian Jiao et al. NATURE
- Phytozome: a comparative platform for green plant genomics
- (2011) David M. Goodstein et al. NUCLEIC ACIDS RESEARCH
- Ancient genome duplications during the evolution of kiwifruit (Actinidia) and related Ericales
- (2010) Tao Shi et al. ANNALS OF BOTANY
- EvoPipes.net: Bioinformatic Tools for Ecological and Evolutionary Genomics
- (2010) Michael S. Barker et al. Evolutionary Bioinformatics
- Paleopolyploidy in the Brassicales: Analyses of the Cleome Transcriptome Elucidate the History of Genome Duplications in Arabidopsis and Other Brassicales
- (2009) Michael S. Barker et al. Genome Biology and Evolution
- The evolutionary significance of ancient genome duplications
- (2009) Yves Van de Peer et al. NATURE REVIEWS GENETICS
- Multiple Paleopolyploidizations during the Evolution of the Compositae Reveal Parallel Patterns of Duplicate Gene Retention after Millions of Years
- (2008) M. S. Barker et al. MOLECULAR BIOLOGY AND EVOLUTION
- Finding and Comparing Syntenic Regions among Arabidopsis and the Outgroups Papaya, Poplar, and Grape: CoGe with Rosids
- (2008) E. Lyons et al. PLANT PHYSIOLOGY
- Synteny and Collinearity in Plant Genomes
- (2008) H. Tang et al. SCIENCE
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