Origin and mechanism of crassulacean acid metabolism in orchids as implied by comparative transcriptomics and genomics of the carbon fixation pathway

Evolutionary history of PEPC genes in green plants: Implications for the evolution of CAM in orchids

(2016) Hua Deng et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The pineapple genome and the evolution of CAM photosynthesis

(2015) Ray Ming et al.   NATURE GENETICS

A roadmap for research on crassulacean acid metabolism (CAM) to enhance sustainable food and bioenergy production in a hotter, drier world

(2015) Xiaohan Yang et al.   NEW PHYTOLOGIST

Orchid phylogenomics and multiple drivers of their extraordinary diversification

(2015) Thomas J. Givnish et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Synthetic biology as it relates to CAM photosynthesis: challenges and opportunities

(2014) Henrique C. DePaoli et al.   JOURNAL OF EXPERIMENTAL BOTANY

Multiple isoforms of phosphoenolpyruvate carboxylase in the Orchidaceae (subtribe Oncidiinae): implications for the evolution of crassulacean acid metabolism

(2014) Katia Silvera et al.   JOURNAL OF EXPERIMENTAL BOTANY

The genome sequence of the orchid Phalaenopsis equestris

(2014) Jing Cai et al.   NATURE GENETICS

Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times

(2014) Liping Zeng et al.   Nature Communications

Parallel Recruitment of Multiple Genes into C4 Photosynthesis

(2013) Pascal-Antoine Christin et al.   Genome Biology and Evolution

Informing the improvement and biodesign of crassulacean acid metabolism via system dynamics modelling

(2013) Anne M. Borland et al.   NEW PHYTOLOGIST

Greater efficiency of photosynthetic carbon fixation due to single amino-acid substitution

(2013) Judith Katharina Paulus et al.   Nature Communications

Comprehensive analysis of RNA-Seq data reveals extensive RNA editing in a human transcriptome

(2012) Zhiyu Peng et al.   NATURE BIOTECHNOLOGY

Phylogenetic Relationships within the Opisthokonta Based on Phylogenomic Analyses of Conserved Single-Copy Protein Domains

(2011) G. Torruella et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

OrchidBase: A Collection of Sequences of the Transcriptome Derived from Orchids

(2011) C.-H. Fu et al.   PLANT AND CELL PHYSIOLOGY

Research on Orchid Biology and Biotechnology

(2011) Y.-Y. Hsiao et al.   PLANT AND CELL PHYSIOLOGY

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Evolution along the crassulacean acid metabolism continuum

(2010) Katia Silvera et al.   FUNCTIONAL PLANT BIOLOGY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

A phylogenetic study of Laeliinae (Orchidaceae) based on combined nuclear and plastid DNA sequences

(2009) Cássio van den Berg et al.   ANNALS OF BOTANY

Exploiting the potential of plants with crassulacean acid metabolism for bioenergy production on marginal lands

(2009) A. M. Borland et al.   JOURNAL OF EXPERIMENTAL BOTANY

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Crassulacean Acid Metabolism and Epiphytism Linked to Adaptive Radiations in the Orchidaceae

(2009) K. Silvera et al.   PLANT PHYSIOLOGY

Comparative genomic analysis of C4 photosynthetic pathway evolution in grasses

(2009) Xiyin Wang et al.   GENOME BIOLOGY