Altered Gene Regulatory Networks Are Associated With the Transition From C3 to Crassulacean Acid Metabolism in Erycina (Oncidiinae: Orchidaceae)

Shifts in gene expression profiles are associated with weak and strong Crassulacean acid metabolism

(2018) Karolina Heyduk et al.   AMERICAN JOURNAL OF BOTANY

Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave

(2018) Hengfu Yin et al.   BMC GENOMICS

Highly Expressed Genes Are Preferentially Co-Opted for C4 Photosynthesis

(2017) Jose J Moreno-Villena et al.   MOLECULAR BIOLOGY AND EVOLUTION

Temporal and spatial transcriptomic and microRNA dynamics of CAM photosynthesis in pineapple

(2017) Ching M. Wai et al.   PLANT JOURNAL

On the Evolutionary Origin of CAM Photosynthesis

(2017) Andrea Bräutigam et al.   PLANT PHYSIOLOGY

Connectivity in gene coexpression networks negatively correlates with rates of molecular evolution in flowering plants

(2017) Rishi R. Masalia et al.   PLoS One

The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism

(2017) Xiaohan Yang et al.   Nature Communications

Network propagation in the cytoscape cyberinfrastructure

(2017) Daniel E. Carlin et al.   PLoS Computational Biology

ARACNe-AP: gene network reverse engineering through adaptive partitioning inference of mutual information

(2016) Alexander Lachmann et al.   BIOINFORMATICS

Orchestration of carbohydrate processing for crassulacean acid metabolism

(2016) Anne M Borland et al.   CURRENT OPINION IN PLANT BIOLOGY

Evolution of a CAM anatomy predates the origins of Crassulacean acid metabolism in the Agavoideae (Asparagaceae)

(2016) Karolina Heyduk et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Near-optimal probabilistic RNA-seq quantification

(2016) Nicolas L Bray et al.   NATURE BIOTECHNOLOGY

Origin and mechanism of crassulacean acid metabolism in orchids as implied by comparative transcriptomics and genomics of the carbon fixation pathway

(2016) Liangsheng Zhang et al.   PLANT JOURNAL

Integration of omic networks in a developmental atlas of maize

(2016) J. W. Walley et al.   SCIENCE

An updated classification of Orchidaceae

(2015) Mark W. Chase et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

The pineapple genome and the evolution of CAM photosynthesis

(2015) Ray Ming et al.   NATURE GENETICS

Crassulacean acid metabolism: a continuous or discrete trait?

(2015) Klaus Winter et al.   NEW PHYTOLOGIST

Tobacco guard cells fix CO2by both Rubisco and PEPcase while sucrose acts as a substrate during light-induced stomatal opening

(2015) Danilo M. Daloso et al.   PLANT CELL AND ENVIRONMENT

Reversible Burst of Transcriptional Changes during Induction of Crassulacean Acid Metabolism in Talinum triangulare

(2015) Dominik Brilhaus et al.   PLANT PHYSIOLOGY

Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series

(2014) M. J. Nueda et al.   BIOINFORMATICS

AliView: a fast and lightweight alignment viewer and editor for large datasets

(2014) Anders Larsson   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Evolutionary bursts inEuphorbia(Euphorbiaceae) are linked with photosynthetic pathway

(2014) James W. Horn et al.   EVOLUTION

Leaf anatomical traits which accommodate the facultative engagement of crassulacean acid metabolism in tropical trees of the genus Clusia

(2014) V. A. Barrera Zambrano et al.   JOURNAL OF EXPERIMENTAL BOTANY

Shared origins of a key enzyme during the evolution of C4 and CAM metabolism

(2014) Pascal-Antoine Christin et al.   JOURNAL OF EXPERIMENTAL BOTANY

Multiple isoforms of phosphoenolpyruvate carboxylase in the Orchidaceae (subtribe Oncidiinae): implications for the evolution of crassulacean acid metabolism

(2014) Katia Silvera et al.   JOURNAL OF EXPERIMENTAL BOTANY

Light quality modulates metabolic synchronization over the diel phases of crassulacean acid metabolism

(2014) J. Ceusters et al.   JOURNAL OF EXPERIMENTAL BOTANY

Establishment of an Agrobacterium-mediated genetic transformation procedure for the experimental model orchid Erycina pusilla

(2014) Shu-Hong Lee et al.   PLANT CELL TISSUE AND ORGAN CULTURE

The single-subunit RING-type E3 ubiquitin ligase RSL1 targets PYL4 and PYR1 ABA receptors in plasma membrane to modulate abscisic acid signaling

(2014) Eduardo Bueso et al.   PLANT JOURNAL

Transgenic Perturbation of the Decarboxylation Phase of Crassulacean Acid Metabolism Alters Physiology and Metabolism But Has Only a Small Effect on Growth

(2014) Louisa V. Dever et al.   PLANT PHYSIOLOGY

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

TIME FOR COFFEEis an essential component in the maintenance of metabolic homeostasis inArabidopsis thaliana

(2013) Alfredo Sanchez-Villarreal et al.   PLANT JOURNAL

PYR/RCAR Receptors Contribute to Ozone-, Reduced Air Humidity-, Darkness-, and CO2-Induced Stomatal Regulation

(2013) E. Merilo et al.   PLANT PHYSIOLOGY

Arabidopsis PPP family of serine/threonine protein phosphatases: many targets but few engines

(2013) R. Glen Uhrig et al.   TRENDS IN PLANT SCIENCE

LOV Domain-Containing F-Box Proteins: Light-Dependent Protein Degradation Modules in Arabidopsis

(2012) Shogo Ito et al.   Molecular Plant

ArabidopsisPYR/PYL/RCAR Receptors Play a Major Role in Quantitative Regulation of Stomatal Aperture and Transcriptional Response to Abscisic Acid

(2012) Miguel Gonzalez-Guzman et al.   PLANT CELL

Anatomical enablers and the evolution of C4photosynthesis in grasses

(2012) Pascal-Antoine Christin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Induction and reversal of crassulacean acid metabolism in Calandrinia polyandra: effects of soil moisture and nutrients

(2011) Klaus Winter et al.   FUNCTIONAL PLANT BIOLOGY

The role of proteins in C3 plants prior to their recruitment into the C4 pathway

(2011) Sylvain Aubry et al.   JOURNAL OF EXPERIMENTAL BOTANY

The incidence of crassulacean acid metabolism in Orchidaceae derived from carbon isotope ratios: a checklist of the flora of Panama and Costa Rica

(2010) KATIA SILVERA et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

The Arabidopsis rcn1-1 Mutation Impairs Dephosphorylation of Phot2, Resulting in Enhanced Blue Light Responses

(2010) T.-S. Tseng et al.   PLANT CELL

Crassulacean Acid Metabolism and Epiphytism Linked to Adaptive Radiations in the Orchidaceae

(2009) K. Silvera et al.   PLANT PHYSIOLOGY

Higher plants use LOV to perceive blue light

(2008) Emilie Demarsy et al.   CURRENT OPINION IN PLANT BIOLOGY

Large-scale mRNA expression profiling in the common ice plant, Mesembryanthemum crystallinum, performing C3 photosynthesis and Crassulacean acid metabolism (CAM)

(2008) John C. Cushman et al.   JOURNAL OF EXPERIMENTAL BOTANY