Venoms for all occasions: The functional toxin profiles of different anatomical regions in sea anemones are related to their ecological function

Tentacle Morphological Variation Coincides with Differential Expression of Toxins in Sea Anemones

(2021) Lauren M. Ashwood et al.   Toxins

The influence of ecological factors on cnidarian venoms

(2021) E.P. O'Hara et al.   Toxicon: X

Characterising Functional Venom Profiles of Anthozoans and Medusozoans within Their Ecological Context

(2020) Lauren M. Ashwood et al.   Marine Drugs

Sea anemones (Exaiptasia pallida) use a secreted adhesive and complex pedal disc morphology for surface attachment

(2020) Jessica L. Clarke et al.   BMC Zoology

A process of convergent amplification and tissue‐specific expression dominate the evolution of toxin and toxin‐like genes in sea anemones

(2019) Joachim M. Surm et al.   MOLECULAR ECOLOGY

The birth and death of toxins with distinct functions: a case study in the sea anemone Nematostella

(2019) Maria Y Sachkova et al.   MOLECULAR BIOLOGY AND EVOLUTION

Combined transcriptomic and proteomic analysis reveals a diversity of venom-related and toxin-like peptides expressed in the mat anemone Zoanthus natalensis (Cnidaria, Hexacorallia)

(2019) Qiwen Liao et al.   ARCHIVES OF TOXICOLOGY

Transcriptomic and Proteomic Analysis of the Tentacles and Mucus of Anthopleura dowii Verrill, 1869

(2019) Santos Ramírez-Carreto et al.   Marine Drugs

The Diversity of Venom: The Importance of Behavior and Venom System Morphology in Understanding Its Ecology and Evolution

(2019) Schendel et al.   Toxins

Sea Anemones: Quiet Achievers in the Field of Peptide Toxins

(2018) Peter J. Prentis et al.   Toxins

Dynamics of venom composition across a complex life cycle

(2018) Yaara Y Columbus-Shenkar et al.   eLife

Cell type-specific expression profiling unravels the development and evolution of stinging cells in sea anemone

(2018) Kartik Sunagar et al.   BMC BIOLOGY

PHAB toxins: a unique family of predatory sea anemone toxins evolving via intra-gene concerted evolution defines a new peptide fold

(2018) Bruno Madio et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

The PRIDE database and related tools and resources in 2019: improving support for quantification data

(2018) Yasset Perez-Riverol et al.   NUCLEIC ACIDS RESEARCH

Determining molecular properties with differential mobility spectrometry and machine learning

(2018) Stephen W. C. Walker et al.   Nature Communications

Peptide from Sea AnemoneMetridium senileAffects Transient Receptor Potential Ankyrin-repeat 1 (TRPA1) Function and Produces Analgesic Effect

(2017) Yulia A. Logashina et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Revisiting venom of the sea anemone Stichodactyla haddoni : Omics techniques reveal the complete toxin arsenal of a well-studied sea anemone genus

(2017) Bruno Madio et al.   Journal of Proteomics

The cnidome and internal morphology ofLophelia pertusa(Linnaeus, 1758) (Cnidaria, Anthozoa)

(2016) Susanna M. Strömberg et al.   ACTA ZOOLOGICA

Insights into the innate immunome of actiniarians using a comparative genomic approach

(2016) Chloé A. van der Burg et al.   BMC GENOMICS

Tissue-Specific Venom Composition and Differential Gene Expression in Sea Anemones

(2016) Jason Macrander et al.   Genome Biology and Evolution

Evolution of the Cytolytic Pore-Forming Proteins (Actinoporins) in Sea Anemones

(2016) Jason Macrander et al.   Toxins

Tentacle Transcriptome and Venom Proteome of the Pacific Sea Nettle, Chrysaora fuscescens (Cnidaria: Scyphozoa)

(2016) Dalia Ponce et al.   Toxins

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Transcriptome and venom proteome of the box jellyfish Chironex fleckeri

(2015) Diane L Brinkman et al.   BMC GENOMICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

The Anadara trapezia transcriptome: A resource for molluscan physiological genomics

(2014) Peter J. Prentis et al.   Marine Genomics

Evolution of separate predation- and defence-evoked venoms in carnivorous cone snails

(2014) Sébastien Dutertre et al.   Nature Communications

Evidence of Accelerated Evolution and Ectodermal-Specific Expression of Presumptive BDS Toxin cDNAs from Anemonia viridis

(2013) Aldo Nicosia et al.   Marine Drugs

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Diversity of Zoanthids (Anthozoa: Hexacorallia) on Hawaiian Seamounts: Description of the Hawaiian Gold Coral and Additional Zoanthids

(2013) Frederic Sinniger et al.   PLoS One

The Nematocyst: a molecular map of the Cnidarian stinging organelle

(2012) Anna Beckmann et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

Analysis of Soluble Protein Contents from the Nematocysts of a Model Sea Anemone Sheds Light on Venom Evolution

(2012) Yehu Moran et al.   MARINE BIOTECHNOLOGY

Sea Anemone (Cnidaria, Anthozoa, Actiniaria) Toxins: An Overview

(2012) Bárbara Frazão et al.   Marine Drugs

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Venom and cnidome ontogeny of the cubomedusae Chironex fleckeri

(2012) S. McClounan et al.   TOXICON

Development of a rational nomenclature for naming peptide and protein toxins from sea anemones

(2012) Joacir Stolarz Oliveira et al.   TOXICON

Complex cocktails: the evolutionary novelty of venoms

(2012) Nicholas R. Casewell et al.   TRENDS IN ECOLOGY & EVOLUTION

Real-time PCR (qPCR) primer design using free online software

(2011) Brenda Thornton et al.   BIOCHEMISTRY AND MOLECULAR BIOLOGY EDUCATION

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Computational methods for transcriptome annotation and quantification using RNA-seq

(2011) Manuel Garber et al.   NATURE METHODS

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

Neurotoxin localization to ectodermal gland cells uncovers an alternative mechanism of venom delivery in sea anemones

(2011) Y. Moran et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS

Acontia and mesentery nematocysts of the sea anemone Metridium senile (Linnaeus, 1761) (Cnidaria: Anthozoa)

(2010) Carina Östman et al.   SCIENTIA MARINA

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

The Toxicogenomic Multiverse: Convergent Recruitment of Proteins Into Animal Venoms

(2009) Bryan G. Fry et al.   Annual Review of Genomics and Human Genetics

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Structural diversity, systematics, and evolution of cnidae

(2009) Daphne Gail Fautin   TOXICON

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS