Harnessing the power of multi‐omics data for predicting climate change response

Genomic evidence of past and future climate-linked loss in a migratory Arctic fish

(2021) K. K. S. Layton et al.   Nature Climate Change

Simple sequence repeats drive genome plasticity and promote adaptive evolution in penaeid shrimp

(2021) Jianbo Yuan et al.   Communications Biology

How is epigenetics predicted to contribute to climate change adaptation? What evidence do we need?

(2021) Katrina McGuigan et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Epigenetic inheritance and reproductive mode in plants and animals

(2021) Dafni Anastasiadi et al.   TRENDS IN ECOLOGY & EVOLUTION

Modular chromosome rearrangements reveal parallel and nonparallel adaptation in a marine fish

(2020) Tony Kess et al.   Ecology and Evolution

Transgenerational Effects of Water-Deficit and Heat Stress on Germination and Seedling Vigour—New Insights from Durum Wheat microRNAs

(2020) Haipei Liu et al.   Plants-Basel

Sources of epigenetic variation and their applications in natural populations

(2020) Bernard Angers et al.   Evolutionary Applications

Mild drought in the vegetative stage induces phenotypic, gene expression, and DNA methylation plasticity in Arabidopsis but no transgenerational effects

(2020) Tom J M Van Dooren et al.   JOURNAL OF EXPERIMENTAL BOTANY

Tissue-specific epigenetic inheritance after paternal heat exposure in male wild guinea pigs

(2020) Alexandra Weyrich et al.   MAMMALIAN GENOME

Environmental enrichment induces intergenerational behavioural and epigenetic effects on fish

(2020) Waldir M. Berbel‐Filho et al.   MOLECULAR ECOLOGY

A Roadmap for Understanding the Evolutionary Significance of Structural Genomic Variation

(2020) Claire Mérot et al.   TRENDS IN ECOLOGY & EVOLUTION

Circumpolar projections of Antarctic krill growth potential

(2020) Devi Veytia et al.   Nature Climate Change

Two different epigenetic information channels in wild three-spined sticklebacks are involved in salinity adaptation

(2020) Melanie J. Heckwolf et al.   Science Advances

Frequent and mild scrotal heat stress in mice epigenetically alters glucose metabolism in the male offspring

(2020) Xiaoyan Wan et al.   AMERICAN JOURNAL OF PHYSIOLOGY-ENDOCRINOLOGY AND METABOLISM

Genomic Prediction of (Mal)Adaptation Across Current and Future Climatic Landscapes

(2020) Thibaut Capblancq et al.   Annual Review of Ecology Evolution and Systematics

An empirical comparison of population genetic analyses using microsatellite and SNP data for a species of conservation concern

(2020) Shawna J. Zimmerman et al.   BMC GENOMICS

The role of maternal methylation in the association between prenatal meteorological conditions and neonatal H19/H19-DMR methylation

(2020) Meng Yang et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Rearing environment affects the genetic architecture and plasticity of DNA methylation in Chinook salmon

(2020) Clare J. Venney et al.   HEREDITY

Copy number variants outperform SNPs to reveal genotype–temperature association in a marine species

(2020) Yann Dorant et al.   MOLECULAR ECOLOGY

Increased epigenetic diversity and transient epigenetic memory in response to salinity stress in Thlaspi arvense

(2020) Yupeng Geng et al.   Ecology and Evolution

Association of CNVs with methylation variation

(2020) Xinghua Shi et al.   npj Genomic Medicine

Transgenerational effects in an ecological context: Conditioning of adult sea urchins to upwelling conditions alters maternal provisioning and progeny phenotype

(2019) Juliet M. Wong et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Considering adaptive genetic variation in climate change vulnerability assessment reduces species range loss projections

(2019) Orly Razgour et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Meta-analysis of epigenome-wide association studies in neonates reveals widespread differential DNA methylation associated with birthweight

(2019) Leanne K. Küpers et al.   Nature Communications

Antenatal Hypoxia and Programming of Glucocorticoid Receptor Expression in the Adult Rat Heart

(2019) Juanxiu Lv et al.   Frontiers in Physiology

DNA Methylation Changes in the Sperm of Captive-Reared Fish: A Route to Epigenetic Introgression in Wild Populations

(2019) Deiene Rodriguez Barreto et al.   MOLECULAR BIOLOGY AND EVOLUTION

Epimutations in developmental genes underlie the onset of domestication in farmed European sea bass

(2019) Dafni Anastasiadi et al.   MOLECULAR BIOLOGY AND EVOLUTION

Multi-platform discovery of haplotype-resolved structural variation in human genomes

(2019) Mark J. P. Chaisson et al.   Nature Communications

Parental environments alter DNA methylation in offspring of the purple sea urchin, Strongylocentrotus purpuratus

(2019) M.E. Strader et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Gestational intermittent hypoxia induces endothelial dysfunction, reduces perivascular adiponectin and causes epigenetic changes in adult male offspring

(2019) Mohammad Badran et al.   JOURNAL OF PHYSIOLOGY-LONDON

Maternal manganese activates anti-apoptotic-related gene expressions via miR-1551 and miR-34c in embryonic hearts from maternal heat stress (Gallus gallus)

(2019) Xiudong Liao et al.   JOURNAL OF THERMAL BIOLOGY

More Arrows in the Ancient DNA Quiver: Use of Paleoepigenomes and Paleomicrobiomes to Investigate Animal Adaptation to Environment

(2019) Yichen Liu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Intra- and inter-generational changes in the cortical DNA methylome in response to therapeutic intermittent hypoxia in mice

(2019) Krystal Courtney Diaz Belmonte et al.   PHYSIOLOGICAL GENOMICS

Conservation Genomics in a Changing Arctic

(2019) Jocelyn P. Colella et al.   TRENDS IN ECOLOGY & EVOLUTION

Comparing methods for detecting multilocus adaptation with multivariate genotype-environment associations

(2018) Brenna R. Forester et al.   MOLECULAR ECOLOGY

Genomic signals of selection predict climate-driven population declines in a migratory bird

(2018) Rachael A. Bay et al.   SCIENCE

Increased transgenerational epigenetic variation, but not predictable epigenetic variants, after environmental exposure in two apomictic dandelion lineages

(2018) Veronica Preite et al.   Ecology and Evolution

A climate-associated multispecies cryptic cline in the northwest Atlantic

(2018) Ryan R. E. Stanley et al.   Science Advances

The piRNA pathway responds to environmental signals to establish intergenerational adaptation to stress

(2018) Tony Belicard et al.   BMC BIOLOGY

DNA methylation as a possible mechanism affecting ability of natural populations to adapt to changing climate

(2018) Zuzana Münzbergová et al.   OIKOS

In Utero Heat Stress Alters the Offspring Epigenome

(2018) A. L. Skibiel et al.   Scientific Reports

Chromosomal fusion and life history-associated genomic variation contribute to within-river local adaptation of Atlantic salmon

(2018) Kyle Wellband et al.   MOLECULAR ECOLOGY

Functions and mechanisms of epigenetic inheritance in animals

(2018) Ksenia Skvortsova et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Using species distribution modelling to determine opportunities for trophic rewilding under future scenarios of climate change

(2018) Scott Jarvie et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Transgenerational effects in asexually reproduced offspring of Populus

(2018) Sumitra Dewan et al.   PLoS One

Role of gene body methylation in acclimatization and adaptation in a basal metazoan

(2018) Groves Dixon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mother–child transmission of epigenetic information by tunable polymorphic imprinting

(2018) Brittany L. Carpenter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Contribution of epigenetic variation to adaptation in Arabidopsis

(2018) Marc W. Schmid et al.   Nature Communications

Transgenerational Effects and Epigenetic Memory in the Clonal Plant Trifolium repens

(2018) Alejandra Pilar Rendina González et al.   Frontiers in Plant Science

Variability in DNA Methylation and Generational Plasticity in the Lombardy Poplar, a Single Genotype Worldwide Distributed Since the Eighteenth Century

(2018) An Vanden Broeck et al.   Frontiers in Plant Science

Environmental Change-Dependent Inherited Epigenetic Response

(2018) Alexandra Weyrich et al.   Genes

Bio-ORACLE v2.0: Extending marine data layers for bioclimatic modelling

(2017) Jorge Assis et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

WorldClim 2: new 1-km spatial resolution climate surfaces for global land areas

(2017) Stephen E. Fick et al.   INTERNATIONAL JOURNAL OF CLIMATOLOGY

Small RNAs Reflect Grandparental Environments in Apomictic Dandelion

(2017) Lionel Morgado et al.   MOLECULAR BIOLOGY AND EVOLUTION

Epigenetic and Genetic Contributions to Adaptation in Chlamydomonas

(2017) Ilkka Kronholm et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ancient chromosomal rearrangement associated with local adaptation of a postglacially colonized population of Atlantic Cod in the northwest Atlantic

(2017) Marion Sinclair-Waters et al.   MOLECULAR ECOLOGY

The Arabidopsis DNA Methylome Is Stable under Transgenerational Drought Stress

(2017) Diep R. Ganguly et al.   PLANT PHYSIOLOGY

Transgenerational transmission of environmental information in C. elegans

(2017) Adam Klosin et al.   SCIENCE

Transgenerational epimutations induced by multi-generation drought imposition mediate rice plant’s adaptation to drought condition

(2017) Xiaoguo Zheng et al.   Scientific Reports

Environmental change drives accelerated adaptation through stimulated copy number variation

(2017) Ryan M. Hull et al.   PLOS BIOLOGY

Validation of band counts in eyestalks for the determination of age of Antarctic krill, Euphausia superba

(2017) Raouf Kilada et al.   PLoS One

Parental Exposure to Dim Light at Night Prior to Mating Alters Offspring Adaptive Immunity

(2017) Yasmine M. Cissé et al.   Scientific Reports

Paternal spatial training enhances offspring’s cognitive performance and synaptic plasticity in wild-type but not improve memory deficit in Alzheimer’s mice

(2017) Shujuan Zhang et al.   Scientific Reports

Vitamin D status and metabolism in an ovine pregnancy model: effect of long-term, high-altitude hypoxia

(2016) Ravi Goyal et al.   AMERICAN JOURNAL OF PHYSIOLOGY-ENDOCRINOLOGY AND METABOLISM

Genome-wide DNA methylation analysis in multiple tissues in primary Sjögren's syndrome reveals regulatory effects at interferon-induced genes

(2016) Juliana Imgenberg-Kreuz et al.   ANNALS OF THE RHEUMATIC DISEASES

Transgenerational plasticity of reproduction depends on rate of warming across generations

(2016) Jennifer M. Donelson et al.   Evolutionary Applications

Ocean acidification influences host DNA methylation and phenotypic plasticity in environmentally susceptible corals

(2016) Hollie M. Putnam et al.   Evolutionary Applications

Genomics of local adaptation with gene flow

(2016) Anna Tigano et al.   MOLECULAR ECOLOGY

Species-wide patterns of DNA methylation variation inQuercus lobataand their association with climate gradients

(2016) Paul F. Gugger et al.   MOLECULAR ECOLOGY

Sex-specific fitness effects of unpredictable early life conditions are associated with DNA methylation in the avian glucocorticoid receptor

(2016) Dustin R. Rubenstein et al.   MOLECULAR ECOLOGY

Epigenetics in ecology and evolution: what we know and what we need to know

(2016) Koen J. F. Verhoeven et al.   MOLECULAR ECOLOGY

DNA methylation mediates genetic variation for adaptive transgenerational plasticity

(2016) Jacob J. Herman et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Hypoxia causes transgenerational impairments in reproduction of fish

(2016) Simon Yuan Wang et al.   Nature Communications

Adaptive phenotypic response to climate enabled by epigenetics in a K-strategy species, the fishLeucoraja ocellata(Rajidae)

(2016) Jackie Lighten et al.   Royal Society Open Science

How might epigenetics contribute to ecological speciation?

(2016) Gilbert Smith et al.   Current Zoology

Population-genetic properties of differentiated copy number variations in cattle

(2016) Lingyang Xu et al.   Scientific Reports

Environmentally induced epigenetic transgenerational inheritance of sperm epimutations promote genetic mutations

(2015) Michael K Skinner et al.   Epigenetics

Antarctic krill population genomics: apparent panmixia, but genome complexity and large population size muddy the water

(2015) Bruce E. Deagle et al.   MOLECULAR ECOLOGY

Paternal intergenerational epigenetic response to heat exposure in male Wild guinea pigs

(2015) Alexandra Weyrich et al.   MOLECULAR ECOLOGY

Epigenetic mutations can both help and hinder adaptive evolution

(2015) Ilkka Kronholm et al.   MOLECULAR ECOLOGY

Epigenetic Basis of Morphological Variation and Phenotypic Plasticity inArabidopsis thaliana

(2015) Rik Kooke et al.   PLANT CELL

Epigenetics of drought-induced trans-generational plasticity: consequences for range limit development

(2015) Jacob Alsdurf et al.   AoB Plants

DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation

(2015) Manu J Dubin et al.   eLife

Persistence of Positive Carryover Effects in the Oyster, Saccostrea glomerata, following Transgenerational Exposure to Ocean Acidification

(2015) Laura M. Parker et al.   PLoS One

Parallel selection on gene copy number variations through evolution of three-spined stickleback genomes

(2014) Shotaro Hirase et al.   BMC GENOMICS

Ecological genomics meets community-level modelling of biodiversity: mapping the genomic landscape of current and future environmental adaptation

(2014) Matthew C. Fitzpatrick et al.   ECOLOGY LETTERS

Risk of false positive genetic associations in complex traits with underlying population structure: A case study

(2014) Carrie J. Finno et al.   VETERINARY JOURNAL

Sperm, but Not Oocyte, DNA Methylome Is Inherited by Zebrafish Early Embryos

(2013) Lan Jiang et al.   CELL

Patterns of DNA Methylation Throughout a Range Expansion of an Introduced Songbird

(2013) A. L. Liebl et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Copy Number Variation: What Is It and What Has It Told Us About Child Psychiatric Disorders?

(2013) Anita Thapar et al.   JOURNAL OF THE AMERICAN ACADEMY OF CHILD AND ADOLESCENT PSYCHIATRY

The impact of climate change on plant epigenomes

(2013) Qiong A. Liu   TRENDS IN GENETICS

Impact of climate change on Antarctic krill

(2012) H Flores et al.   MARINE ECOLOGY PROGRESS SERIES

Genomic Hypomethylation in the Human Germline Associates with Selective Structural Mutability in the Human Genome

(2012) Jian Li et al.   PLoS Genetics

Coalescent patterns for chromosomal inversions in divergent populations

(2011) R. F. Guerrero et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines

(2011) Jordana T Bell et al.   GENOME BIOLOGY

Identification of Copy Number Variation Hotspots in Human Populations

(2010) Wenqing Fu et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Aging by epigenetics—A consequence of chromatin damage?

(2008) John M. Sedivy et al.   EXPERIMENTAL CELL RESEARCH