- Home
- Publications
- Publication Search
- Publication Details
Title
Contribution of epigenetic variation to adaptation in Arabidopsis
Authors
Keywords
-
Journal
Nature Communications
Volume 9, Issue 1, Pages -
Publisher
Springer Nature America, Inc
Online
2018-10-19
DOI
10.1038/s41467-018-06932-5
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Live-cell analysis of DNA methylation during sexual reproduction inArabidopsisreveals context and sex-specific dynamics controlled by noncanonical RdDM
- (2017) Mathieu Ingouff et al. GENES & DEVELOPMENT
- Plant Transgenerational Epigenetics
- (2016) Leandro Quadrana et al. Annual Review of Genetics
- Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions
- (2016) Taiji Kawakatsu et al. CELL
- Genetic and epigenetic differences associated with environmental gradients in replicate populations of two salt marsh perennials
- (2016) C. M. Foust et al. MOLECULAR ECOLOGY
- Comparative spatial genetics and epigenetics of plant populations: heuristic value and a proof of concept
- (2016) Carlos M. Herrera et al. MOLECULAR ECOLOGY
- Epigenetics in ecology and evolution: what we know and what we need to know
- (2016) Koen J. F. Verhoeven et al. MOLECULAR ECOLOGY
- DNA demethylation is initiated in the central cells ofArabidopsisand rice
- (2016) Kyunghyuk Park et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Hyperosmotic stress memory in Arabidopsis is mediated by distinct epigenetically labile sites in the genome and is restricted in the male germline by DNA glycosylase activity
- (2016) Anjar Wibowo et al. eLife
- Epigenetic Basis of Morphological Variation and Phenotypic Plasticity inArabidopsis thaliana
- (2015) Rik Kooke et al. PLANT CELL
- Rate, spectrum, and evolutionary dynamics of spontaneous epimutations
- (2015) Adriaan van der Graaf et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation
- (2015) Manu J Dubin et al. eLife
- Transgenerational inheritance or resetting of stress-induced epigenetic modifications: two sides of the same coin
- (2015) Penny J. Tricker Frontiers in Plant Science
- Selection of Reference Genes for qPCR- and ddPCR-Based Analyses of Gene Expression in Senescing Barley Leaves
- (2015) Agnieszka Zmienko et al. PLoS One
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Functional analysis of the Landsberg erecta allele of FRIGIDA
- (2014) Inga Schmalenbach et al. BMC PLANT BIOLOGY
- Environmentally responsive genome-wide accumulation of de novoArabidopsis thalianamutations and epimutations
- (2014) Caifu Jiang et al. GENOME RESEARCH
- Coverage recommendations for methylation analysis by whole-genome bisulfite sequencing
- (2014) Michael J Ziller et al. NATURE METHODS
- Inheritance of Trans Chromosomal Methylation patterns fromArabidopsisF1 hybrids
- (2014) Ian K. Greaves et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Mapping the Epigenetic Basis of Complex Traits
- (2014) S. Cortijo et al. SCIENCE
- EPIGENETIC VARIATION IN ASEXUALLY REPRODUCING ORGANISMS
- (2013) Koen J.F. Verhoeven et al. EVOLUTION
- Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population
- (2013) R. J. Schmitz et al. GENOME RESEARCH
- Covering Your Bases: Inheritance of DNA Methylation in Plant Genomes
- (2013) Chad E. Niederhuth et al. Molecular Plant
- Patterns of population epigenomic diversity
- (2013) Robert J. Schmitz et al. NATURE
- The Cyclophilin CYP20-2 Modulates the Conformation of BRASSINAZOLE-RESISTANT1, Which Binds the Promoter of FLOWERING LOCUS D to Regulate Flowering in Arabidopsis
- (2013) Y. Zhang et al. PLANT CELL
- Reprogramming of DNA Methylation in Pollen Guides Epigenetic Inheritance via Small RNA
- (2012) Joseph P. Calarco et al. CELL
- DNA Methylation Dynamics during Sexual Reproduction in Arabidopsis thaliana
- (2012) Pauline E. Jullien et al. CURRENT BIOLOGY
- Experimental plant communities develop phylogenetically overdispersed abundance distributions during assembly
- (2012) Eric Allan et al. ECOLOGY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Stress-Induced Chromatin Changes: A Critical View on Their Heritability
- (2012) A. Pecinka et al. PLANT AND CELL PHYSIOLOGY
- Genome-Wide Analysis of DNA Methylation and Gene Expression Changes in Two Arabidopsis Ecotypes and Their Reciprocal Hybrids
- (2012) H. Shen et al. PLANT CELL
- Widespread dynamic DNA methylation in response to biotic stress
- (2012) R. H. Dowen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Trans Chromosomal Methylation in Arabidopsis hybrids
- (2012) I. K. Greaves et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Active DNA Demethylation in Plant Companion Cells Reinforces Transposon Methylation in Gametes
- (2012) C. A. Ibarra et al. SCIENCE
- Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
- (2011) Felix Krueger et al. BIOINFORMATICS
- Spontaneous epigenetic variation in the Arabidopsis thaliana methylome
- (2011) Claude Becker et al. NATURE
- Genome-wide evidence for local DNA methylation spreading from small RNA-targeted sequences in Arabidopsis
- (2011) Ikhlak Ahmed et al. NUCLEIC ACIDS RESEARCH
- PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals
- (2011) Robert Kofler et al. PLoS One
- Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata
- (2011) J. D. Hollister et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Transgenerational Epigenetic Instability Is a Source of Novel Methylation Variants
- (2011) R. J. Schmitz et al. SCIENCE
- Plant germline development: a tale of cross-talk, signaling, and cellular interactions
- (2011) Ueli Grossniklaus SEXUAL PLANT REPRODUCTION
- An alignment algorithm for bisulfite sequencing using the Applied Biosystems SOLiD System
- (2010) Brian D. Ondov et al. BIOINFORMATICS
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines
- (2010) Susanna Atwell et al. NATURE
- Adaptation and extinction in experimentally fragmented landscapes
- (2010) S. Fakheran et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Rate and Molecular Spectrum of Spontaneous Mutations in Arabidopsis thaliana
- (2010) S. Ossowski et al. SCIENCE
- A single-array preprocessing method for estimating full-resolution raw copy numbers from all Affymetrix genotyping arrays including GenomeWideSNP 5 & 6
- (2009) Henrik Bengtsson et al. BIOINFORMATICS
- Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt
- (2009) Steffen Durinck et al. Nature Protocols
- FRIGIDA Delays Flowering in Arabidopsis via a Cotranscriptional Mechanism Involving Direct Interaction with the Nuclear Cap-Binding Complex
- (2009) N. Geraldo et al. PLANT PHYSIOLOGY
- Gene expression map of the Arabidopsis shoot apical meristem stem cell niche
- (2009) R. K. Yadav et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Transgenerational Epigenetic Inheritance: Prevalence, Mechanisms, and Implications for the Study of Heredity and Evolution
- (2009) Eva Jablonka et al. QUARTERLY REVIEW OF BIOLOGY
- Estimation and assessment of raw copy numbers at the single locus level
- (2008) H. Bengtsson et al. BIOINFORMATICS
- Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis
- (2008) Ryan Lister et al. CELL
- A Link between RNA Metabolism and Silencing Affecting Arabidopsis Development
- (2008) Brian D. Gregory et al. DEVELOPMENTAL CELL
- Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
- (2008) Shawn J. Cokus et al. NATURE
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started