Environmental change drives accelerated adaptation through stimulated copy number variation
Published 2017 View Full Article
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Title
Environmental change drives accelerated adaptation through stimulated copy number variation
Authors
Keywords
Copy number variation, Nicotine, Genetic loci, Saccharomyces cerevisiae, Formaldehyde, Galactose, Southern analysis, Acetylation
Journal
PLOS BIOLOGY
Volume 15, Issue 6, Pages e2001333
Publisher
Public Library of Science (PLoS)
Online
2017-06-28
DOI
10.1371/journal.pbio.2001333
References
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- (2016) T. Sabari Sankar et al. NATURE
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- (2016) Bjoern Schwer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The 100-genomes strains, anS. cerevisiaeresource that illuminates its natural phenotypic and genotypic variation and emergence as an opportunistic pathogen
- (2015) Pooja K. Strope et al. GENOME RESEARCH
- A copy number variation map of the human genome
- (2015) Mehdi Zarrei et al. NATURE REVIEWS GENETICS
- Regulation of ribosomal DNA amplification by the TOR pathway
- (2015) Carmen V. Jack et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Extrachromosomal circular DNA is common in yeast
- (2015) Henrik D. Møller et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2014) Jiao Sima et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
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- (2014) David Mayhew et al. MOLECULAR BIOLOGY OF THE CELL
- Structures of Naturally Evolved CUP1 Tandem Arrays in Yeast Indicate That These Arrays Are Generated by Unequal Nonhomologous Recombination
- (2014) Ying Zhao et al. G3-Genes Genomes Genetics
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- (2014) Hema Adhikari et al. PLoS Genetics
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- (2014) Cristina Cruz et al. eLife
- Causes of Genome Instability
- (2013) Andrés Aguilera et al. Annual Review of Genetics
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- (2013) Jessica Lopes da Rosa et al. BIOORGANIC & MEDICINAL CHEMISTRY LETTERS
- Replication Stress-Induced Genome Instability: The Dark Side of Replication Maintenance by Homologous Recombination
- (2013) Antony M. Carr et al. JOURNAL OF MOLECULAR BIOLOGY
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- (2013) L. A. Baker et al. MOLECULAR AND CELLULAR BIOLOGY
- Accelerated gene evolution through replication–transcription conflicts
- (2013) Sandip Paul et al. NATURE
- Rescuing Stalled or Damaged Replication Forks
- (2013) J. T. P. Yeeles et al. Cold Spring Harbor Perspectives in Biology
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- (2013) Satoru Ide et al. PLoS Genetics
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- (2013) Erika Shor et al. PLoS Genetics
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- (2012) Pengfei Liu et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Analysis of the Saccharomyces cerevisiae pan-genome reveals a pool of copy number variants distributed in diverse yeast strains from differing industrial environments
- (2012) B. Dunn et al. GENOME RESEARCH
- Amplification of the CUP1 gene is associated with evolution of copper tolerance in Saccharomyces cerevisiae
- (2012) G. M. Adamo et al. MICROBIOLOGY-SGM
- Recombination-restarted replication makes inverted chromosome fusions at inverted repeats
- (2012) Ken’Ichi Mizuno et al. NATURE
- Gene Loops Enhance Transcriptional Directionality
- (2012) S. M. Tan-Wong et al. SCIENCE
- Histone H3-K56 acetylation is important for genomic stability in mammals
- (2011) Jian Yuan et al. CELL CYCLE
- PROMoter uPstream Transcripts share characteristics with mRNAs and are produced upstream of all three major types of mammalian promoters
- (2011) Pascal Preker et al. NUCLEIC ACIDS RESEARCH
- Repeat expansion in the budding yeast ribosomal DNA can occur independently of the canonical homologous recombination machinery
- (2011) Jonathan Houseley et al. NUCLEIC ACIDS RESEARCH
- Amplification of the Driving Oncogene, KRAS or BRAF, Underpins Acquired Resistance to MEK1/2 Inhibitors in Colorectal Cancer Cells
- (2011) A. S. Little et al. Science Signaling
- Functional consequences of bidirectional promoters
- (2011) Wu Wei et al. TRENDS IN GENETICS
- Facioscapulohumeral muscular dystrophy and DUX4: breaking the silence
- (2011) Silvère M. van der Maarel et al. TRENDS IN MOLECULAR MEDICINE
- Structural Variation in the Human Genome and its Role in Disease
- (2010) Paweł Stankiewicz et al. Annual Review of Medicine
- The Rtt109 histone acetyltransferase facilitates error-free replication to prevent CAG/CTG repeat contractions
- (2010) Jiahui H. Yang et al. DNA REPAIR
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- (2010) Roberta Ruotolo et al. GENOMICS
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- (2010) Sarah Lambert et al. MOLECULAR CELL
- Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls
- (2010) NATURE
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- (2010) Rameen Beroukhim et al. NATURE
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- (2010) Rachel K Szilard et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Adaptation to diverse nitrogen-limited environments by deletion or extrachromosomal element formation of the GAP1 locus
- (2010) D. Gresham et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- BRAF Gene Amplification Can Promote Acquired Resistance to MEK Inhibitors in Cancer Cells Harboring the BRAF V600E Mutation
- (2010) R. B. Corcoran et al. Science Signaling
- The Mother Enrichment Program: A Genetic System for Facile Replicative Life Span Analysis in Saccharomyces cerevisiae
- (2009) D. L. Lindstrom et al. GENETICS
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