Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms

Submesoscale physicochemical dynamics directly shape bacterioplankton community structure in space and time

(2021) Eduard Fadeev et al.   LIMNOLOGY AND OCEANOGRAPHY

Accurate and complete genomes from metagenomes

(2020) Lin-Xing Chen et al.   GENOME RESEARCH

A complete domain-to-species taxonomy for Bacteria and Archaea

(2020) Donovan H. Parks et al.   NATURE BIOTECHNOLOGY

Faster Atlantic currents drive poleward expansion of temperate phytoplankton in the Arctic Ocean

(2020) L. Oziel et al.   Nature Communications

Changes in phytoplankton concentration now drive increased Arctic Ocean primary production

(2020) K. M. Lewis et al.   SCIENCE

The International Bathymetric Chart of the Arctic Ocean Version 4.0

(2020) Martin Jakobsson et al.   Scientific Data

metaFlye: scalable long-read metagenome assembly using repeat graphs

(2020) Mikhail Kolmogorov et al.   NATURE METHODS

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

(2019) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies

(2019) Dongwan D. Kang et al.   PeerJ

GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database

(2019) Pierre-Alain Chaumeil et al.   BIOINFORMATICS

NanoPack: visualizing and processing long-read sequencing data

(2018) Wouter De Coster et al.   BIOINFORMATICS

FMLRC: Hybrid long read error correction using an FM-index

(2018) Jeremy R. Wang et al.   BMC BIOINFORMATICS

Increased intrusion of warming Atlantic water leads to rapid expansion of temperate phytoplankton in the Arctic

(2018) Griet Neukermans et al.   GLOBAL CHANGE BIOLOGY

Arctic warming hotspot in the northern Barents Sea linked to declining sea-ice import

(2018) Sigrid Lind et al.   Nature Climate Change

Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy

(2018) Christian M. K. Sieber et al.   Nature Microbiology

Nonpareil 3: Fast Estimation of Metagenomic Coverage and Sequence Diversity

(2018) Luis M. Rodriguez-R et al.   mSystems

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

(2017) Robert M Bowers et al.   NATURE BIOTECHNOLOGY

Greater role for Atlantic inflows on sea-ice loss in the Eurasian Basin of the Arctic Ocean

(2017) Igor V. Polyakov et al.   SCIENCE

Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO2concentrations

(2016) Alexander J. Probst et al.   ENVIRONMENTAL MICROBIOLOGY

MEGAHIT v1.0: A fast and scalable metagenome assembler driven by advanced methodologies and community practices

(2016) Dinghua Li et al.   METHODS

A new view of the tree of life

(2016) Laura A. Hug et al.   Nature Microbiology

MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets

(2015) Yu-Wei Wu et al.   BIOINFORMATICS

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Anvi’o: an advanced analysis and visualization platform for ‘omics data

(2015) A. Murat Eren et al.   PeerJ

Binning metagenomic contigs by coverage and composition

(2014) Johannes Alneberg et al.   NATURE METHODS

Nonpareil: a redundancy-based approach to assess the level of coverage in metagenomic datasets

(2013) Luis M. Rodriguez-R et al.   BIOINFORMATICS

On the Circulation of Atlantic Water in the Arctic Ocean

(2013) Michael A. Spall   JOURNAL OF PHYSICAL OCEANOGRAPHY

The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks

(2013) Pelin Yilmaz et al.   NUCLEIC ACIDS RESEARCH

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

(2012) Evguenia Kopylova et al.   BIOINFORMATICS

Activation of old carbon by erosion of coastal and subsea permafrost in Arctic Siberia

(2012) J. E. Vonk et al.   NATURE

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Substrate-Controlled Succession of Marine Bacterioplankton Populations Induced by a Phytoplankton Bloom

(2012) H. Teeling et al.   SCIENCE

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Fifty years of coastal erosion and retrogressive thaw slump activity on Herschel Island, southern Beaufort Sea, Yukon Territory, Canada

(2007) H. Lantuit et al.   GEOMORPHOLOGY