The Human Gut Phageome: Origins and Roles in the Human Gut Microbiome
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Title
The Human Gut Phageome: Origins and Roles in the Human Gut Microbiome
Authors
Keywords
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Journal
Frontiers in Cellular and Infection Microbiology
Volume 11, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2021-06-04
DOI
10.3389/fcimb.2021.643214
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Note: Only part of the references are listed.- Massive expansion of human gut bacteriophage diversity
- (2021) Luis F. Camarillo-Guerrero et al. CELL
- VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses
- (2021) Jiarong Guo et al. Microbiome
- Genomic and ecological attributes of marine bacteriophages encoding bacterial virulence genes
- (2020) Cynthia B. Silveira et al. BMC GENOMICS
- Bacteriophages Isolated from Stunted Children Can Regulate Gut Bacterial Communities in an Age-Specific Manner
- (2020) Mohammadali Khan Mirzaei et al. Cell Host & Microbe
- Biogeographic study of human gut-associated crAssphage suggests impacts from industrialization and recent expansion
- (2020) Tanvi P. Honap et al. PLoS One
- Acquisition, transmission and strain diversity of human gut-colonizing crAss-like phages
- (2020) Benjamin A. Siranosian et al. Nature Communications
- Fecal Viral Community Responses to High-Fat Diet in Mice
- (2020) Anjelique Schulfer et al. mSphere
- Expansion of known ssRNA phage genomes: From tens to over a thousand
- (2020) J. Callanan et al. Science Advances
- Faecal virome transplantation decreases symptoms of type 2 diabetes and obesity in a murine model
- (2020) Torben Sølbeck Rasmussen et al. GUT
- The stepwise assembly of the neonatal virome is modulated by breastfeeding
- (2020) Guanxiang Liang et al. NATURE
- DRAM for distilling microbial metabolism to automate the curation of microbiome function
- (2020) Michael Shaffer et al. NUCLEIC ACIDS RESEARCH
- The Gut Virome Database Reveals Age-Dependent Patterns of Virome Diversity in the Human Gut
- (2020) Ann C. Gregory et al. Cell Host & Microbe
- Dynamics of bacteriophages in gut of giant pandas reveal a potential regulation of dietary intake on bacteriophage composition
- (2020) Min Guo et al. SCIENCE OF THE TOTAL ENVIRONMENT
- Autochthonous faecal viral transfer (FVT) impacts the murine microbiome after antibiotic perturbation
- (2020) Lorraine A. Draper et al. BMC BIOLOGY
- CheckV assesses the quality and completeness of metagenome-assembled viral genomes
- (2020) Stephen Nayfach et al. NATURE BIOTECHNOLOGY
- Intestinal Microbiota as a Host Defense Mechanism to Infectious Threats
- (2019) Simona Iacob et al. Frontiers in Microbiology
- Megaphages infect Prevotella and variants are widespread in gut microbiomes
- (2019) Audra E. Devoto et al. Nature Microbiology
- Dynamic marine viral infections and major contribution to photosynthetic processes shown by spatiotemporal picoplankton metatranscriptomes
- (2019) Ella T. Sieradzki et al. Nature Communications
- Gut mucosal virome alterations in ulcerative colitis
- (2019) Tao Zuo et al. GUT
- Expansion of Bacteriophages Is Linked to Aggravated Intestinal Inflammation and Colitis
- (2019) Lasha Gogokhia et al. Cell Host & Microbe
- Phage Therapy: A Renewed Approach to Combat Antibiotic-Resistant Bacteria
- (2019) Kaitlyn E. Kortright et al. Cell Host & Microbe
- Bacteriophages of the Human Gut: The “Known Unknown” of the Microbiome
- (2019) Andrey N. Shkoporov et al. Cell Host & Microbe
- PHANOTATE: a novel approach to gene identification in phage genomes
- (2019) Katelyn McNair et al. BIOINFORMATICS
- Cytokine Circuits in Cardiovascular Disease
- (2019) Jesse W. Williams et al. IMMUNITY
- Dynamic Modulation of the Gut Microbiota and Metabolome by Bacteriophages in a Mouse Model
- (2019) Bryan B. Hsu et al. Cell Host & Microbe
- Viruses as key reservoirs of antibiotic resistance genes in the environment
- (2019) Didier Debroas et al. ISME Journal
- Type 1 Diabetes: an Association Between Autoimmunity, the Dynamics of Gut Amyloid-producing E. coli and Their Phages
- (2019) George Tetz et al. Scientific Reports
- Global phylogeography and ancient evolution of the widespread human gut virus crAssphage
- (2019) Robert A. Edwards et al. Nature Microbiology
- Simple animal models for microbiome research
- (2019) Angela E. Douglas NATURE REVIEWS MICROBIOLOGY
- The altered gut virome community in rhesus monkeys is correlated with the gut bacterial microbiome and associated metabolites
- (2019) Heng Li et al. Virology Journal
- Defining the human gut host–phage network through single-cell viral tagging
- (2019) Mária Džunková et al. Nature Microbiology
- The Human Gut Virome Is Highly Diverse, Stable, and Individual Specific
- (2019) Andrey N. Shkoporov et al. Cell Host & Microbe
- Treatment of chronic left ventricular assist device infection with local application of bacteriophages
- (2019) Johanna Mulzer et al. EUROPEAN JOURNAL OF CARDIO-THORACIC SURGERY
- Metatranscriptomic reconstruction reveals RNA viruses with the potential to shape carbon cycling in soil
- (2019) Evan P. Starr et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Gut Bacteriophage: Current Understanding and Challenges
- (2019) Thomas D. S. Sutton et al. Frontiers in Endocrinology
- Whole-Virome Analysis Sheds Light on Viral Dark Matter in Inflammatory Bowel Disease
- (2019) Adam G. Clooney et al. Cell Host & Microbe
- Veterinary use of bacteriophage therapy in intensively-reared livestock
- (2019) Adriano Gigante et al. Virology Journal
- Inflammation and atherosclerosis: Cardiovascular evaluation in patients with autoimmune diseases
- (2018) Ricardo O. Escárcega et al. AUTOIMMUNITY REVIEWS
- Lysogeny is prevalent and widely distributed in the murine gut microbiota
- (2018) Min-Soo Kim et al. ISME Journal
- Bacteriophage Applications for Food Production and Processing
- (2018) Zachary Moye et al. Viruses-Basel
- Shared and Distinct Features of Human Milk and Infant Stool Viromes
- (2018) Pia S. Pannaraj et al. Frontiers in Microbiology
- Viromes of one year old infants reveal the impact of birth mode on microbiome diversity
- (2018) Angela McCann et al. PeerJ
- Phages infecting Faecalibacterium prausnitzii belong to novel viral genera that help to decipher intestinal viromes
- (2018) Jeffrey K. Cornuault et al. Microbiome
- A human gut phage catalog correlates the gut phageome with type 2 diabetes
- (2018) Yingfei Ma et al. Microbiome
- Reproducible protocols for metagenomic analysis of human faecal phageomes
- (2018) Andrey N. Shkoporov et al. Microbiome
- Phage puppet masters of the marine microbial realm
- (2018) Mya Breitbart et al. Nature Microbiology
- Murine colitis reveals a disease-associated bacteriophage community
- (2018) Breck A. Duerkop et al. Nature Microbiology
- A Linear Plasmid-Like Prophage of Actinomyces odontolyticus Promotes Biofilm Assembly
- (2018) Mengyu Shen et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Enteric Virome and Bacterial Microbiota in Children with Ulcerative Colitis and Crohnʼs Disease
- (2018) Melissa A. Fernandes et al. JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION
- A major lineage of non-tailed dsDNA viruses as unrecognized killers of marine bacteria
- (2018) Kathryn M. Kauffman et al. NATURE
- Bowel Biofilms: Tipping Points between a Healthy and Compromised Gut?
- (2018) Hanne L.P. Tytgat et al. TRENDS IN MICROBIOLOGY
- RNA Phage Biology in a Metagenomic Era
- (2018) Julie Callanan et al. Viruses-Basel
- Biology and Taxonomy of crAss-like Bacteriophages, the Most Abundant Virus in the Human Gut
- (2018) Emma Guerin et al. Cell Host & Microbe
- The gut microbiome: Relationships with disease and opportunities for therapy
- (2018) Juliana Durack et al. JOURNAL OF EXPERIMENTAL MEDICINE
- The Pfam protein families database in 2019
- (2018) Sara El-Gebali et al. NUCLEIC ACIDS RESEARCH
- Virome biogeography in the lower gastrointestinal tract of rhesus macaques with chronic diarrhea
- (2018) Guoyan Zhao et al. VIROLOGY
- ΦCrAss001 represents the most abundant bacteriophage family in the human gut and infects Bacteroides intestinalis
- (2018) Andrey N. Shkoporov et al. Nature Communications
- The Human Gut Virome in Hypertension
- (2018) Maozhen Han et al. Frontiers in Microbiology
- Efficacy of Sterile Fecal Filtrate Transfer for Treating Patients With Clostridium difficile Infection
- (2017) Stephan J. Ott et al. GASTROENTEROLOGY
- Bacteriophage transfer during faecal microbiota transplantation in Clostridium difficile infection is associated with treatment outcome
- (2017) Tao Zuo et al. GUT
- Influence of diet on the gut microbiome and implications for human health
- (2017) Rasnik K. Singh et al. Journal of Translational Medicine
- Pseudomonas phage inhibition of Candida albicans
- (2017) Hasan Nazik et al. MICROBIOLOGY-SGM
- Ménage à trois in the human gut: interactions between host, bacteria and phages
- (2017) Mohammadali Khan Mirzaei et al. NATURE REVIEWS MICROBIOLOGY
- Intestinal virome changes precede autoimmunity in type I diabetes-susceptible children
- (2017) Guoyan Zhao et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Inflammation boosts bacteriophage transfer between Salmonella spp.
- (2017) Médéric Diard et al. SCIENCE
- Metagenomic Approaches to Assess Bacteriophages in Various Environmental Niches
- (2017) Stephen Hayes et al. Viruses-Basel
- Bacteriophage Transcytosis Provides a Mechanism To Cross Epithelial Cell Layers
- (2017) Sophie Nguyen et al. mBio
- Single-virus genomics reveals hidden cosmopolitan and abundant viruses
- (2017) Francisco Martinez-Hernandez et al. Nature Communications
- The gut microbiome in atherosclerotic cardiovascular disease
- (2017) Zhuye Jie et al. Nature Communications
- Viral communities of the human gut: metagenomic analysis of composition and dynamics
- (2017) Varun Aggarwala et al. Mobile DNA
- Development of the gut microbiota in infancy and its impact on health in later life
- (2017) Masaru Tanaka et al. ALLERGOLOGY INTERNATIONAL
- Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity
- (2017) Simon Roux et al. PeerJ
- VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data
- (2017) Jie Ren et al. Microbiome
- Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study
- (2017) Dae-Wook Kang et al. Microbiome
- The gut mycobiome of the Human Microbiome Project healthy cohort
- (2017) Andrea K. Nash et al. Microbiome
- Maternal inheritance of bifidobacterial communities and bifidophages in infants through vertical transmission
- (2017) Sabrina Duranti et al. Microbiome
- Discovery of an expansive bacteriophage family that includes the most abundant viruses from the human gut
- (2017) Natalya Yutin et al. Nature Microbiology
- DISARM is a widespread bacterial defence system with broad anti-phage activities
- (2017) Gal Ofir et al. Nature Microbiology
- Population cycles and species diversity in dynamic Kill-the-Winner model of microbial ecosystems
- (2017) Sergei Maslov et al. Scientific Reports
- Bacteriophages as potential new mammalian pathogens
- (2017) George V. Tetz et al. Scientific Reports
- The gut microbiome and HIV-1 pathogenesis
- (2016) Stephanie M. Dillon et al. AIDS
- Bacteriophage-encoded depolymerases: their diversity and biotechnological applications
- (2016) Diana P. Pires et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- The gut microbiome in human immunodeficiency virus infection
- (2016) Gili Zilberman-Schapira et al. BMC Medicine
- Altered Virome and Bacterial Microbiome in Human Immunodeficiency Virus-Associated Acquired Immunodeficiency Syndrome
- (2016) Cynthia L. Monaco et al. Cell Host & Microbe
- May the Force Be With You: The Light and Dark Sides of the Microbiota–Gut–Brain Axis in Neuropsychiatry
- (2016) Eoin Sherwin et al. CNS DRUGS
- Phages rarely encode antibiotic resistance genes: a cautionary tale for virome analyses
- (2016) François Enault et al. ISME Journal
- Prokaryotic Virus Orthologous Groups (pVOGs): a resource for comparative genomics and protein family annotation
- (2016) Ana Laura Grazziotin et al. NUCLEIC ACIDS RESEARCH
- Imbalance of bacteriome profiles within the Finnish Diabetes Prediction and Prevention study: Parallel use of 16S profiling and virome sequencing in stool samples from children with islet autoimmunity and matched controls
- (2016) Ondrej Cinek et al. PEDIATRIC DIABETES
- Healthy human gut phageome
- (2016) Pilar Manrique et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Temperate phages both mediate and drive adaptive evolution in pathogen biofilms
- (2016) Emily V. Davies et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability
- (2016) Moran Yassour et al. Science Translational Medicine
- The Bacterial Microbiome and Virome Milestones of Infant Development
- (2016) Efrem S. Lim et al. TRENDS IN MICROBIOLOGY
- Emerging Technologies for Gut Microbiome Research
- (2016) Jason W. Arnold et al. TRENDS IN MICROBIOLOGY
- Studying Bacterial Multispecies Biofilms: Where to Start?
- (2016) Henriette L. Røder et al. TRENDS IN MICROBIOLOGY
- Bacteriophage infections of microbiota can lead to leaky gut in an experimental rodent model
- (2016) George Tetz et al. Gut Pathogens
- Fecal Transplants: What Is Being Transferred?
- (2016) Diana P. Bojanova et al. PLOS BIOLOGY
- Revised Estimates for the Number of Human and Bacteria Cells in the Body
- (2016) Ron Sender et al. PLOS BIOLOGY
- Characterization of the Gut Microbiome Using 16S or Shotgun Metagenomics
- (2016) Juan Jovel et al. Frontiers in Microbiology
- T4 Phage Tail Adhesin Gp12 Counteracts LPS-Induced Inflammation In Vivo
- (2016) Paulina Miernikiewicz et al. Frontiers in Microbiology
- Culture of previously uncultured members of the human gut microbiota by culturomics
- (2016) Jean-Christophe Lagier et al. Nature Microbiology
- Species–function relationships shape ecological properties of the human gut microbiome
- (2016) Sara Vieira-Silva et al. Nature Microbiology
- Oral Phage Therapy of Acute Bacterial Diarrhea With Two Coliphage Preparations: A Randomized Trial in Children From Bangladesh
- (2016) Shafiqul Alam Sarker et al. EBioMedicine
- Piggyback-the-Winner in host-associated microbial communities
- (2016) Cynthia B Silveira et al. npj Biofilms and Microbiomes
- Evaluation of methods to purify virus-like particles for metagenomic sequencing of intestinal viromes
- (2015) Manuel Kleiner et al. BMC GENOMICS
- Disease-Specific Alterations in the Enteric Virome in Inflammatory Bowel Disease
- (2015) Jason M. Norman et al. CELL
- The paradoxical role of IL-17 in atherosclerosis
- (2015) Fangchen Gong et al. CELLULAR IMMUNOLOGY
- The Rebirth of Culture in Microbiology through the Example of Culturomics To Study Human Gut Microbiota
- (2015) Jean-Christophe Lagier et al. CLINICAL MICROBIOLOGY REVIEWS
- How informative is the mouse for human gut microbiota research?
- (2015) T. L. A. Nguyen et al. Disease Models & Mechanisms
- Starter culture design to overcome phage infection during yogurt fermentation
- (2015) Chengjie Ma et al. FOOD SCIENCE AND BIOTECHNOLOGY
- Metagenomic Analysis of Crohnʼs Disease Patients Identifies Changes in the Virome and Microbiome Related to Disease Status and Therapy, and Detects Potential Interactions and Biomarkers
- (2015) Vicente Pérez-Brocal et al. INFLAMMATORY BOWEL DISEASES
- Divergent responses of viral and bacterial communities in the gut microbiome to dietary disturbances in mice
- (2015) Adina Howe et al. ISME Journal
- Gut Inflammation and Immunity: What Is the Role of the Human Gut Virome?
- (2015) Alfredo Focà et al. MEDIATORS OF INFLAMMATION
- Dysbiotic bacteria translocate in progressive SIV infection
- (2015) Z Klase et al. Mucosal Immunology
- Early life dynamics of the human gut virome and bacterial microbiome in infants
- (2015) Efrem S Lim et al. NATURE MEDICINE
- The Phyre2 web portal for protein modeling, prediction and analysis
- (2015) Lawrence A Kelley et al. Nature Protocols
- Gut biogeography of the bacterial microbiota
- (2015) Gregory P. Donaldson et al. NATURE REVIEWS MICROBIOLOGY
- Subdiffusive motion of bacteriophage in mucosal surfaces increases the frequency of bacterial encounters
- (2015) Jeremy J. Barr et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Gut DNA viromes of Malawian twins discordant for severe acute malnutrition
- (2015) Alejandro Reyes et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Flow cytometric quantification of viruses in activated sludge
- (2015) M.R. Brown et al. WATER RESEARCH
- Oral Application of T4 Phage Induces Weak Antibody Production in the Gut and in the Blood
- (2015) Joanna Majewska et al. Viruses-Basel
- Modular approach to customise sample preparation procedures for viral metagenomics: a reproducible protocol for virome analysis
- (2015) Nádia Conceição-Neto et al. Scientific Reports
- Phage-mediated Dispersal of Biofilm and Distribution of Bacterial Virulence Genes Is Induced by Quorum Sensing
- (2015) Friederike S. Rossmann et al. PLoS Pathogens
- On-Demand Isolation of Bacteriophages Against Drug-Resistant Bacteria for Personalized Phage Therapy
- (2015) Sari Mattila et al. Frontiers in Microbiology
- Optimizing protocols for extraction of bacteriophages prior to metagenomic analyses of phage communities in the human gut
- (2015) Josué L. Castro-Mejía et al. Microbiome
- Combining metagenomics, metatranscriptomics and viromics to explore novel microbial interactions: towards a systems-level understanding of human microbiome
- (2015) Shirley Bikel et al. Computational and Structural Biotechnology Journal
- Effects of Long Term Antibiotic Therapy on Human Oral and Fecal Viromes
- (2015) Shira R. Abeles et al. PLoS One
- Spontaneously Induced Prophages in Lactobacillus gasseri Contribute to Horizontal Gene Transfer
- (2014) J. L. Baugher et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Using Signature Genes as Tools To Assess Environmental Viral Ecology and Diversity
- (2014) Evelien M. Adriaenssens et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- Comparison of different assembly and annotation tools on analysis of simulated viral metagenomic communities in the gut
- (2014) Jorge F Vázquez-Castellanos et al. BMC GENOMICS
- Human Gut Microbes Use Multiple Transporters to Distinguish Vitamin B12 Analogs and Compete in the Gut
- (2014) Patrick H. Degnan et al. Cell Host & Microbe
- BREX is a novel phage resistance system widespread in microbial genomes
- (2014) T. Goldfarb et al. EMBO JOURNAL
- Kingdom-Agnostic Metagenomics and the Importance of Complete Characterization of Enteric Microbial Communities
- (2014) Jason M. Norman et al. GASTROENTEROLOGY
- Bacteria, phages and pigs: the effects of in-feed antibiotics on the microbiome at different gut locations
- (2014) Torey Looft et al. ISME Journal
- Classification and quantification of bacteriophage taxa in human gut metagenomes
- (2014) Alison S Waller et al. ISME Journal
- Observation of inflammatory responses in mice orally fed with bacteriophage T7
- (2014) K. Park et al. JOURNAL OF APPLIED MICROBIOLOGY
- Intestinal Microbiota, Microbial Translocation, and Systemic Inflammation in Chronic HIV Infection
- (2014) Duy M. Dinh et al. JOURNAL OF INFECTIOUS DISEASES
- An integrated catalog of reference genes in the human gut microbiome
- (2014) Junhua Li et al. NATURE BIOTECHNOLOGY
- Elevated Levels of Circulating DNA in Cardiovascular Disease Patients: Metagenomic Profiling of Microbiome in the Circulation
- (2014) Vasudevan Dinakaran et al. PLoS One
- Profile Hidden Markov Models for the Detection of Viruses within Metagenomic Sequence Data
- (2014) Peter Skewes-Cox et al. PLoS One
- Characterization of virus-like particles associated with the human faecal and caecal microbiota
- (2014) Lesley Hoyles et al. RESEARCH IN MICROBIOLOGY
- A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes
- (2014) Bas E. Dutilh et al. Nature Communications
- Bacteriophages as Vehicles for Antibiotic Resistance Genes in the Environment
- (2014) Jose Luis Balcazar PLoS Pathogens
- Emerging methods to study bacteriophage infection at the single-cell level
- (2014) Vinh T. Dang et al. Frontiers in Microbiology
- Antibiotic alternatives: the substitution of antibiotics in animal husbandry?
- (2014) Guyue Cheng et al. Frontiers in Microbiology
- The methylome of the gut microbiome: disparate Dam methylation patterns in intestinal Bacteroides dorei
- (2014) Michael T. Leonard et al. Frontiers in Microbiology
- Antibiotic Resistance Genes in the Bacteriophage DNA Fraction of Human Fecal Samples
- (2013) Pablo Quirós et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Probiotic Bacteria Reduce Salmonella Typhimurium Intestinal Colonization by Competing for Iron
- (2013) Elisa Deriu et al. Cell Host & Microbe
- Single-cell and population level viral infection dynamics revealed by phageFISH, a method to visualize intracellular and free viruses
- (2013) Elke Allers et al. ENVIRONMENTAL MICROBIOLOGY
- Bacteriophages in Gut Samples From Pediatric Crohn’s Disease Patients
- (2013) Josef Wagner et al. INFLAMMATORY BOWEL DISEASES
- Geographical diversity of Streptococcus thermophilus phages in Chinese yoghurt plants
- (2013) Chengjie Ma et al. INTERNATIONAL DAIRY JOURNAL
- Impact of thermal and biocidal treatments on lactococcal 936-type phages
- (2013) James Murphy et al. INTERNATIONAL DAIRY JOURNAL
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Antibiotic treatment expands the resistance reservoir and ecological network of the phage metagenome
- (2013) Sheetal R. Modi et al. NATURE
- Diet rapidly and reproducibly alters the human gut microbiome
- (2013) Lawrence A. David et al. NATURE
- Humans Have Antibodies against a Plant Virus: Evidence from Tobacco Mosaic Virus
- (2013) Ruolan Liu et al. PLoS One
- Rapid evolution of the human gut virome
- (2013) S. Minot et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Gnotobiotic mouse model of phage-bacterial host dynamics in the human gut
- (2013) A. Reyes et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Bacteriophage adhering to mucus provide a non-host-derived immunity
- (2013) J. J. Barr et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genome signature-based dissection of human gut metagenomes to extract subliminal viral sequences
- (2013) Lesley A. Ogilvie et al. Nature Communications
- A new topology of the HK97-like fold revealed in Bordetella bacteriophage by cryoEM at 3.5 Å resolution
- (2013) Xing Zhang et al. eLife
- Novel Podoviridae Family Bacteriophage Infecting Weissella cibaria Isolated from Kimchi
- (2012) Hans Petter Kleppen et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Effects of Bacteriophage Supplementation on Egg Performance, Egg Quality, Excreta Microflora, and Moisture Content in Laying Hens
- (2012) P. Y. Zhao et al. ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES
- Pathogenic Simian Immunodeficiency Virus Infection Is Associated with Expansion of the Enteric Virome
- (2012) Scott A. Handley et al. CELL
- Microbial culturomics: paradigm shift in the human gut microbiome study
- (2012) J.-C. Lagier et al. CLINICAL MICROBIOLOGY AND INFECTION
- CRISPR targeting reveals a reservoir of common phages associated with the human gut microbiome
- (2012) A. Stern et al. GENOME RESEARCH
- Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization
- (2012) I. Sharon et al. GENOME RESEARCH
- The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates
- (2012) Erwin G Zoetendal et al. ISME Journal
- Metagenomics and metatranscriptomics: Windows on CF-associated viral and microbial communities
- (2012) Yan Wei Lim et al. Journal of Cystic Fibrosis
- A metagenome-wide association study of gut microbiota in type 2 diabetes
- (2012) Junjie Qin et al. NATURE
- Diversity, stability and resilience of the human gut microbiota
- (2012) Catherine A. Lozupone et al. NATURE
- Going viral: next-generation sequencing applied to phage populations in the human gut
- (2012) Alejandro Reyes et al. NATURE REVIEWS MICROBIOLOGY
- Hypervariable loci in the human gut virome
- (2012) S. Minot et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A composite bacteriophage alters colonization by an intestinal commensal bacterium
- (2012) B. A. Duerkop et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Fake virus particles generated by fluorescence microscopy
- (2012) Patrick Forterre et al. TRENDS IN MICROBIOLOGY
- Metagenomics and future perspectives in virus discovery
- (2012) John L Mokili et al. Current Opinion in Virology
- Inflammatory Bowel Disease Is Associated With an Increased Incidence of Cardiovascular Events
- (2011) Andres J Yarur et al. AMERICAN JOURNAL OF GASTROENTEROLOGY
- Archaea as emerging organisms in complex human microbiomes
- (2011) Bédis Dridi et al. ANAEROBE
- Diversity and Abundance of Single-Stranded DNA Viruses in Human Feces
- (2011) Min-Soo Kim et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Detection and identification of plasma bacterial and viral elements in HIV/AIDS patients in comparison to healthy adults
- (2011) S.-K. Li et al. CLINICAL MICROBIOLOGY AND INFECTION
- The human gut virome: Inter-individual variation and dynamic response to diet
- (2011) S. Minot et al. GENOME RESEARCH
- Alterations in the gut microbiome of children with severe ulcerative colitis
- (2011) Sonia Michail et al. INFLAMMATORY BOWEL DISEASES
- Bacteriophage F336 Recognizes the Capsular Phosphoramidate Modification of Campylobacter jejuni NCTC11168
- (2011) M. C. H. Sorensen et al. JOURNAL OF BACTERIOLOGY
- Comparison of the fecal microbiota profiles between ulcerative colitis and Crohn’s disease using terminal restriction fragment length polymorphism analysis
- (2011) Akira Andoh et al. JOURNAL OF GASTROENTEROLOGY
- Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease
- (2011) Zeneng Wang et al. NATURE
- Genetics and pathogenesis of inflammatory bowel disease
- (2011) Bernard Khor et al. NATURE
- eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges
- (2011) S. Powell et al. NUCLEIC ACIDS RESEARCH
- A modular view of the bacteriophage genomic space: identification of host and lifestyle marker modules
- (2011) Gipsi Lima-Mendez et al. RESEARCH IN MICROBIOLOGY
- Antibiotics in Feed Induce Prophages in Swine Fecal Microbiomes
- (2011) H. K. Allen et al. mBio
- Accelerated Profile HMM Searches
- (2011) Sean R. Eddy PLoS Computational Biology
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- Quantitative Assessment of the Human Gut Microbiome Using Multitag Pyrosequencing
- (2010) Patrick Gillevet et al. CHEMISTRY & BIODIVERSITY
- Dysbiosis of fecal microbiota in Crohnʼs disease patients as revealed by a custom phylogenetic microarray
- (2010) Seungha Kang et al. INFLAMMATORY BOWEL DISEASES
- Long-term impacts of antibiotic exposure on the human intestinal microbiota
- (2010) C. Jernberg et al. MICROBIOLOGY-SGM
- Viruses in the faecal microbiota of monozygotic twins and their mothers
- (2010) Alejandro Reyes et al. NATURE
- A human gut microbial gene catalogue established by metagenomic sequencing
- (2010) Junjie Qin et al. NATURE
- The biofilm matrix
- (2010) Hans-Curt Flemming et al. NATURE REVIEWS MICROBIOLOGY
- Pepper Mild Mottle Virus, a Plant Virus Associated with Specific Immune Responses, Fever, Abdominal Pains, and Pruritus in Humans
- (2010) Philippe Colson et al. PLoS One
- Prophage Spontaneous Activation Promotes DNA Release Enhancing Biofilm Formation in Streptococcus pneumoniae
- (2010) Margarida Carrolo et al. PLoS One
- Enterophages, a group of phages infecting Enterococcus faecalis, and their potential as alternate indicators of human faecal contamination
- (2010) N. Bonilla et al. WATER SCIENCE AND TECHNOLOGY
- Frequency Analysis Techniques for Identification of Viral Genetic Data
- (2010) V. Trifonov et al. mBio
- Cryptic prophages help bacteria cope with adverse environments
- (2010) Xiaoxue Wang et al. Nature Communications
- High affinity peptides for the recognition of the heart disease biomarker troponin I identified using phage display
- (2009) Jong Pil Park et al. BIOTECHNOLOGY AND BIOENGINEERING
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- Diagnosis and Classification of Diabetes Mellitus
- (2009) DIABETES CARE
- Use of in vivo phage display to engineer novel adenoviruses for targeted delivery to the cardiac vasculature
- (2009) Campbell G. Nicol et al. FEBS LETTERS
- Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models
- (2009) Arthur Brady et al. NATURE METHODS
- Laboratory procedures to generate viral metagenomes
- (2009) Rebecca V Thurber et al. Nature Protocols
- The Secret Life of the Anthrax Agent Bacillus anthracis: Bacteriophage-Mediated Ecological Adaptations
- (2009) Raymond Schuch et al. PLoS One
- The phage abortive infection system, ToxIN, functions as a protein–RNA toxin–antitoxin pair
- (2009) Peter C. Fineran et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Microbial translocation is associated with sustained failure in CD4+ T-cell reconstitution in HIV-infected patients on long-term highly active antiretroviral therapy
- (2008) Giulia Marchetti et al. AIDS
- Gut Microbes in Crohn's Disease: Getting to Know You Better?
- (2008) Seamus J. Murphy et al. AMERICAN JOURNAL OF GASTROENTEROLOGY
- Dysbiosis in inflammatory bowel disease: a role for bacteriophages?
- (2008) P Lepage et al. GUT
- The biofilm life cycle and virulence of Pseudomonas aeruginosa are dependent on a filamentous prophage
- (2008) Scott A Rice et al. ISME Journal
- The Role of Prophage for Genome Diversification within a Clonal Lineage of Lactobacillus johnsonii: Characterization of the Defective Prophage LJ771
- (2008) E. Denou et al. JOURNAL OF BACTERIOLOGY
- Rates of evolutionary change in viruses: patterns and determinants
- (2008) Siobain Duffy et al. NATURE REVIEWS GENETICS
- The Sorcerer II Global Ocean Sampling Expedition: Metagenomic Characterization of Viruses within Aquatic Microbial Samples
- (2008) Shannon J. Williamson et al. PLoS One
- Viral diversity and dynamics in an infant gut
- (2008) Mya Breitbart et al. RESEARCH IN MICROBIOLOGY
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