Emerging methods to study bacteriophage infection at the single-cell level
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Title
Emerging methods to study bacteriophage infection at the single-cell level
Authors
Keywords
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Journal
Frontiers in Microbiology
Volume 5, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2014-12-23
DOI
10.3389/fmicb.2014.00724
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Note: Only part of the references are listed.- Contrasting genomic patterns and infection strategies of two co-existingBacteroidetespodovirus genera
- (2014) Karin Holmfeldt et al. ENVIRONMENTAL MICROBIOLOGY
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- (2014) Li Deng et al. NATURE
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- (2014) Luis F. Jover et al. NATURE REVIEWS MICROBIOLOGY
- A theoretical analysis of how strain-specific viruses can control microbial species diversity
- (2014) T. F. Thingstad et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2014) B. L. Hurwitz et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2014) K. Anantharaman et al. SCIENCE
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- (2014) A. I. Culley et al. mBio
- Single Cell Genomics: Advances and Future Perspectives
- (2014) Iain C. Macaulay et al. PLoS Genetics
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- (2014) Simon Roux et al. eLife
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- (2013) Elke Allers et al. ENVIRONMENTAL MICROBIOLOGY
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- (2013) S.P. Salifu et al. JOURNAL OF APPLIED MICROBIOLOGY
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- (2013) Yanlin Zhao et al. NATURE
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- (2013) Bonnie L. Hurwitz et al. PLoS One
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- (2013) A. Reyes et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2013) S. J. Beckett et al. Interface Focus
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- (2013) Bonnie L Hurwitz et al. GENOME BIOLOGY
- Virus-driven nitrogen cycling enhances phytoplankton growth
- (2012) EJ Shelford et al. AQUATIC MICROBIAL ECOLOGY
- Comparison of metagenomic samples using sequence signatures
- (2012) Bai Jiang et al. BMC GENOMICS
- Evaluation of methods to concentrate and purify ocean virus communities through comparative, replicated metagenomics
- (2012) Bonnie L. Hurwitz et al. ENVIRONMENTAL MICROBIOLOGY
- Towards quantitative metagenomics of wild viruses and other ultra-low concentration DNA samples: a rigorous assessment and optimization of the linker amplification method
- (2012) Melissa B. Duhaime et al. ENVIRONMENTAL MICROBIOLOGY
- Genomes of marine cyanopodoviruses reveal multiple origins of diversity
- (2012) S. J. Labrie et al. ENVIRONMENTAL MICROBIOLOGY
- CRISPR targeting reveals a reservoir of common phages associated with the human gut microbiome
- (2012) A. Stern et al. GENOME RESEARCH
- Orthologous Gene Clusters and Taxon Signature Genes for Viruses of Prokaryotes
- (2012) D. M. Kristensen et al. JOURNAL OF BACTERIOLOGY
- Digital PCR hits its stride
- (2012) Monya Baker NATURE METHODS
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- (2012) Joshua C Vaughan et al. NATURE METHODS
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- (2012) Roger S. Lasken NATURE REVIEWS MICROBIOLOGY
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- (2012) Jody J. Wright et al. NATURE REVIEWS MICROBIOLOGY
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- (2012) Sajia Akhter et al. NUCLEIC ACIDS RESEARCH
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- (2012) Simon Roux et al. PLoS One
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- (2012) Joshua S. Weitz et al. TRENDS IN MICROBIOLOGY
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- (2012) Ariel D. Weinberger et al. PLoS Computational Biology
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