Acquisition, transmission and strain diversity of human gut-colonizing crAss-like phages
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Acquisition, transmission and strain diversity of human gut-colonizing crAss-like phages
Authors
Keywords
-
Journal
Nature Communications
Volume 11, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2020-01-15
DOI
10.1038/s41467-019-14103-3
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- The Perturbation of Infant Gut Microbiota Caused by Cesarean Delivery Is Partially Restored by Exclusive Breastfeeding
- (2019) Yu Liu et al. Frontiers in Microbiology
- Stunted microbiota and opportunistic pathogen colonization in caesarean-section birth
- (2019) Yan Shao et al. NATURE
- The Human Gut Virome Is Highly Diverse, Stable, and Individual Specific
- (2019) Andrey N. Shkoporov et al. Cell Host & Microbe
- Strain Tracking Reveals the Determinants of Bacterial Engraftment in the Human Gut Following Fecal Microbiota Transplantation
- (2018) Christopher S. Smillie et al. Cell Host & Microbe
- Strain-Level Analysis of Mother-to-Child Bacterial Transmission during the First Few Months of Life
- (2018) Moran Yassour et al. Cell Host & Microbe
- Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome
- (2018) Pamela Ferretti et al. Cell Host & Microbe
- Correlation of crAssphage qPCR Markers with Culturable and Molecular Indicators of Human Fecal Pollution in an Impacted Urban Watershed
- (2018) Elyse Stachler et al. ENVIRONMENTAL SCIENCE & TECHNOLOGY
- Selective maternal seeding and environment shape the human gut microbiome
- (2018) Katri Korpela et al. GENOME RESEARCH
- Quantitative CrAssphage real-time PCR assay derived from data of multiple geographically distant populations
- (2018) Ondrej Cinek et al. JOURNAL OF MEDICAL VIROLOGY
- MUMmer4: A fast and versatile genome alignment system
- (2018) Guillaume Marçais et al. PLoS Computational Biology
- Viromes of one year old infants reveal the impact of birth mode on microbiome diversity
- (2018) Angela McCann et al. PeerJ
- Biology and Taxonomy of crAss-like Bacteriophages, the Most Abundant Virus in the Human Gut
- (2018) Emma Guerin et al. Cell Host & Microbe
- ΦCrAss001 represents the most abundant bacteriophage family in the human gut and infects Bacteroides intestinalis
- (2018) Andrey N. Shkoporov et al. Nature Communications
- A diversity-generating retroelement encoded by a globally ubiquitous Bacteroides phage
- (2018) Sean Benler et al. Microbiome
- Long-term colonisation with donor bacteriophages following successful faecal microbial transplantation
- (2018) L. A. Draper et al. Microbiome
- Development and application of a real-time polymerase chain reaction assay for detection of a novel gut bacteriophage (crAssphage)
- (2017) Yuying Liang et al. JOURNAL OF MEDICAL VIROLOGY
- Long-term taxonomic and functional divergence from donor bacterial strains following fecal microbiota transplantation in immunocompromised patients
- (2017) Eli L. Moss et al. PLoS One
- Intestinal virome changes precede autoimmunity in type I diabetes-susceptible children
- (2017) Guoyan Zhao et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Discovery of an expansive bacteriophage family that includes the most abundant viruses from the human gut
- (2017) Natalya Yutin et al. Nature Microbiology
- Studying Vertical Microbiome Transmission from Mothers to Infants by Strain-Level Metagenomic Profiling
- (2017) Francesco Asnicar et al. mSystems
- crAssphage is not associated with diarrhoea and has high genetic diversity
- (2016) Y. Y. LIANG et al. EPIDEMIOLOGY AND INFECTION
- SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File Manipulation
- (2016) Wei Shen et al. PLoS One
- Unified representation of genetic variants
- (2015) Adrian Tan et al. BIOINFORMATICS
- Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life
- (2015) Fredrik Bäckhed et al. Cell Host & Microbe
- zCompositions — R package for multivariate imputation of left-censored data under a compositional approach
- (2015) Javier Palarea-Albaladejo et al. CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS
- Different Ancestries of R Tailocins in RhizosphericPseudomonasIsolates
- (2015) Maarten G.K. Ghequire et al. Genome Biology and Evolution
- Metagenomic Analysis of Milk of Healthy and Mastitis-Suffering Women
- (2015) Esther Jiménez et al. JOURNAL OF HUMAN LACTATION
- Early life dynamics of the human gut virome and bacterial microbiome in infants
- (2015) Efrem S Lim et al. NATURE MEDICINE
- A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes
- (2014) Bas E. Dutilh et al. Nature Communications
- Kraken: ultrafast metagenomic sequence classification using exact alignments
- (2014) Derrick E Wood et al. GENOME BIOLOGY
- Unifying the analysis of high-throughput sequencing datasets: characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by compositional data analysis
- (2014) Andrew D Fernandes et al. Microbiome
- Decreased gut microbiota diversity, delayed Bacteroidetes colonisation and reduced Th1 responses in infants delivered by Caesarean section
- (2013) Hedvig E Jakobsson et al. GUT
- Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products
- (2013) Sergey Nurk et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff
- (2012) Pablo Cingolani et al. FLY
- The variant call format and VCFtools
- (2011) P. Danecek et al. BIOINFORMATICS
- Virus-Plus-Susceptibility Gene Interaction Determines Crohn's Disease Gene Atg16L1 Phenotypes in Intestine
- (2010) Ken Cadwell et al. CELL
- Viruses in the faecal microbiota of monozygotic twins and their mothers
- (2010) Alejandro Reyes et al. NATURE
- Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns
- (2010) M. G. Dominguez-Bello et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started