Toward the integration ofOmicsdata in epidemiological studies: still a “long and winding road”

Genomic analyses identify molecular subtypes of pancreatic cancer

(2016) Peter Bailey et al.   NATURE

Epidemiologic Design and Analysis for Proteomic Studies: A Primer on -Omic Technologies

(2015) Harald Mischak et al.   AMERICAN JOURNAL OF EPIDEMIOLOGY

Integrative phenotyping framework (iPF): integrative clustering of multiple omics data identifies novel lung disease subphenotypes

(2015) SungHwan Kim et al.   BMC GENOMICS

Framework for the Integration of Genomics, Epigenomics and Transcriptomics in Complex Diseases

(2015) Silvia Pineda et al.   HUMAN HEREDITY

Is precision medicine the route to a healthy world?

(2015) Denis Horgan et al.   LANCET

Human phenotyping on a population scale

(2015) Vivien Marx   NATURE METHODS

Methods of integrating data to uncover genotype–phenotype interactions

(2015) Marylyn D. Ritchie et al.   NATURE REVIEWS GENETICS

Genome-wide mutational spectra analysis reveals significant cancer-specific heterogeneity

(2015) Hua Tan et al.   Scientific Reports

The Human Blood Metabolome-Transcriptome Interface

(2015) Jörg Bartel et al.   PLoS Genetics

Integration Analysis of Three Omics Data Using Penalized Regression Methods: An Application to Bladder Cancer

(2015) Silvia Pineda et al.   PLoS Genetics

Design and Analysis of Metabolomics Studies in Epidemiologic Research: A Primer on -Omic Technologies

(2014) I. Tzoulaki et al.   AMERICAN JOURNAL OF EPIDEMIOLOGY

Integrative genomic analysis identifies epigenetic marks that mediate genetic risk for epithelial ovarian cancer

(2014) Devin C Koestler et al.   BMC Medical Genomics

Data integration in the era of omics: current and future challenges

(2014) David Gomez-Cabrero et al.   BMC Systems Biology

Epigenome-wide methylation in DNA from peripheral blood as a marker of risk for breast cancer

(2014) Gianluca Severi et al.   BREAST CANCER RESEARCH AND TREATMENT

Novel Metabolic Markers for the Risk of Diabetes Development in American Indians

(2014) Jinying Zhao et al.   DIABETES CARE

Next generation modeling in GWAS: comparing different genetic architectures

(2014) Evangelina López de Maturana et al.   HUMAN GENETICS

Potential of fecal microbiota for early-stage detection of colorectal cancer

(2014) G. Zeller et al.   Molecular Systems Biology

A polygenic burden of rare disruptive mutations in schizophrenia

(2014) Shaun M. Purcell et al.   NATURE

Similarity network fusion for aggregating data types on a genomic scale

(2014) Bo Wang et al.   NATURE METHODS

Application of Multi-SNP Approaches Bayesian LASSO and AUC-RF to Detect Main Effects of Inflammatory-Gene Variants Associated with Bladder Cancer Risk

(2014) Evangelina López de Maturana et al.   PLoS One

An integrated epigenomic analysis for type 2 diabetes susceptibility loci in monozygotic twins

(2014) Wei Yuan et al.   Nature Communications

Molecular Evidence for the Inverse Comorbidity between Central Nervous System Disorders and Cancers Detected by Transcriptomic Meta-analyses

(2014) Kristina Ibáñez et al.   PLoS Genetics

Priors in Whole-Genome Regression: The Bayesian Alphabet Returns

(2013) D. Gianola   GENETICS

Pathology imaging informatics for quantitative analysis of whole-slide images

(2013) Sonal Kothari et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Genome-wide association analysis identifies 13 new risk loci for schizophrenia

(2013) Stephan Ripke et al.   NATURE GENETICS

The Nature of Nurture: Refining the Definition of the Exposome

(2013) Gary W. Miller et al.   TOXICOLOGICAL SCIENCES

Phenome-Wide Association Study (PheWAS) for Detection of Pleiotropy within the Population Architecture using Genomics and Epidemiology (PAGE) Network

(2013) Sarah A. Pendergrass et al.   PLoS Genetics

Integrating Genetic Association, Genetics of Gene Expression, and Single Nucleotide Polymorphism Set Analysis to Identify Susceptibility Loci for Type 2 Diabetes Mellitus

(2012) D. M. Greenawalt et al.   AMERICAN JOURNAL OF EPIDEMIOLOGY

The exposome: from concept to utility

(2012) Christopher Paul Wild   INTERNATIONAL JOURNAL OF EPIDEMIOLOGY

Detectable clonal mosaicism and its relationship to aging and cancer

(2012) Kevin B Jacobs et al.   NATURE GENETICS

AUC-RF: A New Strategy for Genomic Profiling with Random Forest

(2011) M. Luz Calle et al.   HUMAN HEREDITY

Charting a course for genomic medicine from base pairs to bedside

(2011) Eric D. Green et al.   NATURE

Mosaic Uniparental Disomies and Aneuploidies as Large Structural Variants of the Human Genome

(2010) Benjamín Rodríguez-Santiago et al.   AMERICAN JOURNAL OF HUMAN GENETICS

An application of Random Forests to a genome-wide association dataset: Methodological considerations & new findings

(2010) Benjamin A Goldstein et al.   BMC GENETICS

Advances in understanding cancer genomes through second-generation sequencing

(2010) Matthew Meyerson et al.   NATURE REVIEWS GENETICS

Environment and Disease Risks

(2010) S. M. Rappaport et al.   SCIENCE

The $1,000 genome, the $100,000 analysis?

(2010) Elaine R Mardis   Genome Medicine

Biology of urothelial tumorigenesis: insights from genetically engineered mice

(2009) Xue-Ru Wu   CANCER AND METASTASIS REVIEWS

Machine learning in genome-wide association studies

(2009) Silke Szymczak et al.   GENETIC EPIDEMIOLOGY

Researching Genetic Versus Nongenetic Determinants of Disease: A Comparison and Proposed Unification

(2009) J. P. A. Ioannidis et al.   Science Translational Medicine

Nonparametric Methods for Incorporating Genomic Information Into Genetic Evaluations: An Application to Mortality in Broilers

(2008) O. Gonzalez-Recio et al.   GENETICS

Reproducing Kernel Hilbert Spaces Regression Methods for Genomic Assisted Prediction of Quantitative Traits

(2008) D. Gianola et al.   GENETICS

The Bayesian Lasso

(2008) Trevor Park et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION