AUC-RF: A New Strategy for Genomic Profiling with Random Forest

Quantitative trait prediction based on genetic marker-array data, a simulation study

(2011) Wai-ki Yip et al.   BIOINFORMATICS

BOOST: A Fast Approach to Detecting Gene-Gene Interactions in Genome-wide Case-Control Studies

(2010) Xiang Wan et al.   AMERICAN JOURNAL OF HUMAN GENETICS

mbmdr: an R package for exploring gene–gene interactions associated with binary or quantitative traits

(2010) M. Luz Calle et al.   BIOINFORMATICS

On safari to Random Jungle: a fast implementation of Random Forests for high-dimensional data

(2010) Daniel F. Schwarz et al.   BIOINFORMATICS

Letter to the Editor: Stability of Random Forest importance measures

(2010) M. L. Calle et al.   BRIEFINGS IN BIOINFORMATICS

Gene Expression Profiles Identify Inflammatory Signatures in Dendritic Cells

(2010) Anna Torri et al.   PLoS One

The Genetic Interpretation of Area under the ROC Curve in Genomic Profiling

(2010) Naomi R. Wray et al.   PLoS Genetics

Using the Optimal Robust Receiver Operating Characteristic (ROC) Curve for Predictive Genetic Tests

(2009) Qing Lu et al.   BIOMETRICS

Performance of random forest when SNPs are in linkage disequilibrium

(2009) Yan A Meng et al.   BMC BIOINFORMATICS

Stability and aggregation of ranked gene lists

(2009) A.-L. Boulesteix et al.   BRIEFINGS IN BIOINFORMATICS

Evaluation of the discriminative accuracy of genomic profiling in the prediction of common complex diseases

(2009) Ramal Moonesinghe et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

Beyond odds ratios — communicating disease risk based on genetic profiles

(2009) Peter Kraft et al.   NATURE REVIEWS GENETICS

Interpretation of Genetic Association Studies: Markers with Replicated Highly Significant Odds Ratios May Be Poor Classifiers

(2009) Johanna Jakobsdottir et al.   PLoS Genetics

From Disease Association to Risk Assessment: An Optimistic View from Genome-Wide Association Studies on Type 1 Diabetes

(2009) Zhi Wei et al.   PLoS Genetics

Using the Optimal Receiver Operating Characteristic Curve to Design a Predictive Genetic Test, Exemplified with Type 2 Diabetes

(2008) Qing Lu et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Conditional Variable Importance for Random Forests

(2008) Carolin Strobl et al.   BMC BIOINFORMATICS

The gene expression signature of genomic instability in breast cancer is an independent predictor of clinical outcome

(2008) Jens K. Habermann et al.   INTERNATIONAL JOURNAL OF CANCER

Improving strategies for detecting genetic patterns of disease susceptibility in association studies

(2008) M. L. Calle et al.   STATISTICS IN MEDICINE