Pathology imaging informatics for quantitative analysis of whole-slide images

Histological image classification using biologically interpretable shape-based features

(2013) Sonal Kothari et al.   BMC MEDICAL IMAGING

An efficient computational framework for the analysis of whole slide images: Application to follicular lymphoma immunohistochemistry

(2012) Siddharth Samsi et al.   Journal of Computational Science

Visual pattern mining in histology image collections using bag of features

(2011) Angel Cruz-Roa et al.   ARTIFICIAL INTELLIGENCE IN MEDICINE

An active learning based classification strategy for the minority class problem: application to histopathology annotation

(2011) Scott Doyle et al.   BMC BIOINFORMATICS

Morphometic analysis of TCGA glioblastoma multiforme

(2011) Hang Chang et al.   BMC BIOINFORMATICS

Ensemble based system for whole-slide prostate cancer probability mapping using color texture features

(2011) Matthew D. DiFranco et al.   COMPUTERIZED MEDICAL IMAGING AND GRAPHICS

Multi-resolution graph-based analysis of histopathological whole slide images: Application to mitotic cell extraction and visualization

(2011) Vincent Roullier et al.   COMPUTERIZED MEDICAL IMAGING AND GRAPHICS

Computational pathology: Challenges and promises for tissue analysis

(2011) Thomas J. Fuchs et al.   COMPUTERIZED MEDICAL IMAGING AND GRAPHICS

Real time decision support system for diagnosis of rare cancers, trained in parallel, on a graphics processing unit

(2011) Konstantinos Sidiropoulos et al.   COMPUTERS IN BIOLOGY AND MEDICINE

A supervised visual model for finding regions of interest in basal cell carcinoma images

(2011) Ricardo Gutiérrez et al.   Diagnostic Pathology

Learning regions of interest from low level maps in virtual microscopy

(2011) David Romo et al.   Diagnostic Pathology

A Learning-Based Similarity Fusion and Filtering Approach for Biomedical Image Retrieval Using SVM Classification and Relevance Feedback

(2011) M. Rahman et al.   IEEE TRANSACTIONS ON INFORMATION TECHNOLOGY IN BIOMEDICINE

Partitioning Histopathological Images: An Integrated Framework for Supervised Color-Texture Segmentation and Cell Splitting

(2011) Hui Kong et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Content-based histopathology image retrieval using a kernel-based semantic annotation framework

(2011) Juan C. Caicedo et al.   JOURNAL OF BIOMEDICAL INFORMATICS

ImageMiner: a software system for comparative analysis of tissue microarrays using content-based image retrieval, high-performance computing, and grid technology

(2011) David J Foran et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Removing Batch Effects in Analysis of Expression Microarray Data: An Evaluation of Six Batch Adjustment Methods

(2011) Chao Chen et al.   PLoS One

Enhanced virtual microscopy for collaborative education

(2011) Marc M Triola et al.   BMC Medical Education

Multivariate image mining

(2011) Julia Herold et al.   Wiley Interdisciplinary Reviews-Data Mining and Knowledge Discovery

Stable feature selection for biomarker discovery

(2010) Zengyou He et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Time-efficient sparse analysis of histopathological whole slide images

(2010) Chao-Hui Huang et al.   COMPUTERIZED MEDICAL IMAGING AND GRAPHICS

An Integrative Approach for In Silico Glioma Research

(2010) Lee A D Cooper et al.   IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING

A Boosted Bayesian Multiresolution Classifier for Prostate Cancer Detection From Digitized Needle Biopsies

(2010) S. Doyle et al.   IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING

Interactive Histology of Large-Scale Biomedical Image Stacks

(2010) Won-Ki Jeong et al.   IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS

Computer Vision Approach to Morphometric Feature Analysis of Basal Cell Nuclei for Evaluating Malignant Potentiality of Oral Submucous Fibrosis

(2010) M. Muthu Rama Krishnan et al.   JOURNAL OF MEDICAL SYSTEMS

Restoration of distorted colour microscopic images from transverse chromatic aberration of imperfect lenses

(2010) H.-S. WU et al.   JOURNAL OF MICROSCOPY

High-throughput detection of prostate cancer in histological sections using probabilistic pairwise Markov models

(2010) James P. Monaco et al.   MEDICAL IMAGE ANALYSIS

Informatics for practicing anatomical pathologists: marking a new era in pathology practice

(2010) Manal Y Gabril et al.   MODERN PATHOLOGY

Towards a knowledge-based Human Protein Atlas

(2010) Mathias Uhlen et al.   NATURE BIOTECHNOLOGY

A comparison of batch effect removal methods for enhancement of prediction performance using MAQC-II microarray gene expression data

(2010) J Luo et al.   PHARMACOGENOMICS JOURNAL

ECM-aware cell-graph mining for bone tissue modeling and classification

(2009) Cemal Cagatay Bilgin et al.   DATA MINING AND KNOWLEDGE DISCOVERY

Computerized Image-Based Detection and Grading of Lymphocytic Infiltration in HER2+ Breast Cancer Histopathology

(2009) A.N. Basavanhally et al.   IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING

Virtual Microscopy and Grid-Enabled Decision Support for Large-Scale Analysis of Imaged Pathology Specimens

(2009) Lin Yang et al.   IEEE TRANSACTIONS ON INFORMATION TECHNOLOGY IN BIOMEDICINE

PathMiner: A Web-Based Tool for Computer-Assisted Diagnostics in Pathology

(2009) Lin Yang et al.   IEEE TRANSACTIONS ON INFORMATION TECHNOLOGY IN BIOMEDICINE

Automatic Classification for Pathological Prostate Images Based on Fractal Analysis

(2009) Po-Whei Huang et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Automatic segmentation of colon glands using object-graphs

(2009) Cigdem Gunduz-Demir et al.   MEDICAL IMAGE ANALYSIS

Semantic content analysis and annotation of histological images

(2008) Feiyang Yu et al.   COMPUTERS IN BIOLOGY AND MEDICINE

Computer-aided identification of ovarian cancer in confocal microendoscope images

(2008) Saurabh Srivastava et al.   JOURNAL OF BIOMEDICAL OPTICS

Knife-edge scanning microscopy for imaging and reconstruction of three-dimensional anatomical structures of the mouse brain

(2008) D. MAYERICH et al.   JOURNAL OF MICROSCOPY

Automated Renal Cell Carcinoma Subtype Classification Using Morphological, Textural and Wavelets Based Features

(2008) Qaiser Chaudry et al.   Journal of Signal Processing Systems for Signal Image and Video Technology

Histopathological Image Analysis Using Model-Based Intermediate Representations and Color Texture: Follicular Lymphoma Grading

(2008) Olcay Sertel et al.   Journal of Signal Processing Systems for Signal Image and Video Technology

Comprehensive genomic characterization defines human glioblastoma genes and core pathways

(2008) Roger McLendon et al.   NATURE

Computer-aided evaluation of neuroblastoma on whole-slide histology images: Classifying grade of neuroblastic differentiation

(2008) J. Kong et al.   PATTERN RECOGNITION