Design and Analysis of Metabolomics Studies in Epidemiologic Research: A Primer on -Omic Technologies

Combining Spectral Ordering with Peak Fitting for One-Dimensional NMR Quantitative Metabolomics

(2013) Manuel Liebeke et al.   ANALYTICAL CHEMISTRY

Transforming Epidemiology for 21st Century Medicine and Public Health

(2013) M. J. Khoury et al.   CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION

Metabolomics Reveals Unexpected Responses to Oral Glucose

(2013) James R. Bain et al.   DIABETES

Biomarkers for Type 2 Diabetes and Impaired Fasting Glucose Using a Nontargeted Metabolomics Approach

(2013) C. Menni et al.   DIABETES

Deciphering the complex: Methodological overview of statistical models to derive OMICS-based biomarkers

(2013) Marc Chadeau-Hyam et al.   ENVIRONMENTAL AND MOLECULAR MUTAGENESIS

Normalizing and Integrating Metabolomics Data

(2012) Alysha M. De Livera et al.   ANALYTICAL CHEMISTRY

Opportunities and Challenges for Selected Emerging Technologies in Cancer Epidemiology: Mitochondrial, Epigenomic, Metabolomic, and Telomerase Profiling

(2012) M. Verma et al.   CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION

Metabolomic Profiling for the Identification of Novel Biomarkers and Mechanisms Related to Common Cardiovascular Diseases

(2012) Svati H. Shah et al.   CIRCULATION

Metabolite Profiling Identifies Pathways Associated With Metabolic Risk in Humans

(2012) Susan Cheng et al.   CIRCULATION

Identification of Serum Metabolites Associated With Risk of Type 2 Diabetes Using a Targeted Metabolomic Approach

(2012) A. Floegel et al.   DIABETES

Early Metabolic Markers of the Development of Dysglycemia and Type 2 Diabetes and Their Physiological Significance

(2012) E. Ferrannini et al.   DIABETES

Branched-Chain and Aromatic Amino Acids Are Predictors of Insulin Resistance in Young Adults

(2012) P. Wurtz et al.   DIABETES CARE

Novel biomarkers for pre-diabetes identified by metabolomics

(2012) Rui Wang-Sattler et al.   Molecular Systems Biology

Metabolic phenotyping in clinical and surgical environments

(2012) Jeremy K. Nicholson et al.   NATURE

MetaboLights—an open-access general-purpose repository for metabolomics studies and associated meta-data

(2012) Kenneth Haug et al.   NUCLEIC ACIDS RESEARCH

Comparisons of established risk prediction models for cardiovascular disease: systematic review

(2012) G. C. M. Siontis et al.   BMJ-British Medical Journal

Mining the Unknown: A Systems Approach to Metabolite Identification Combining Genetic and Metabolic Information

(2012) Jan Krumsiek et al.   PLoS Genetics

PeakML/mzMatch: A File Format, Java Library, R Library, and Tool-Chain for Mass Spectrometry Data Analysis

(2011) Richard A. Scheltema et al.   ANALYTICAL CHEMISTRY

Predicting Death

(2011) George C. M. Siontis   ARCHIVES OF INTERNAL MEDICINE

ESS++: a C++ objected-oriented algorithm for Bayesian stochastic search model exploration

(2011) Leonardo Bottolo et al.   BIOINFORMATICS

An empirical assessment of validation practices for molecular classifiers

(2011) P. J. Castaldi et al.   BRIEFINGS IN BIOINFORMATICS

Use of reclassification for assessment of improved prediction: an empirical evaluation

(2011) Ioanna Tzoulaki et al.   INTERNATIONAL JOURNAL OF EPIDEMIOLOGY

Metabolite profiles and the risk of developing diabetes

(2011) Thomas J Wang et al.   NATURE MEDICINE

Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry

(2011) Warwick B Dunn et al.   Nature Protocols

Metabolomics in the study of kidney diseases

(2011) Robert H. Weiss et al.   Nature Reviews Nephrology

Improving Validation Practices in "Omics" Research

(2011) J. P. A. Ioannidis et al.   SCIENCE

Metscape: a Cytoscape plug-in for visualizing and interpreting metabolomic data in the context of human metabolic networks

(2010) Jing Gao et al.   BIOINFORMATICS

MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data

(2010) Tomáš Pluskal et al.   BMC BIOINFORMATICS

Salivary metabolite signatures of oral cancer and leukoplakia

(2010) Jie Wei et al.   INTERNATIONAL JOURNAL OF CANCER

What Makes a Good Predictor?

(2010) John P. A. Ioannidis et al.   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

The evolution of partial least squares models and related chemometric approaches in metabonomics and metabolic phenotyping

(2010) Judith M. Fonville et al.   JOURNAL OF CHEMOMETRICS

Expectations, validity, and reality in omics

(2010) John P.A. Ioannidis   JOURNAL OF CLINICAL EPIDEMIOLOGY

Opening up the "Black Box": Metabolic phenotyping and metabolome-wide association studies in epidemiology

(2010) Magda Bictash et al.   JOURNAL OF CLINICAL EPIDEMIOLOGY

Two-Dimensional Statistical Recoupling for the Identification of Perturbed Metabolic Networks from NMR Spectroscopy

(2010) Benjamin J. Blaise et al.   JOURNAL OF PROTEOME RESEARCH

Metabolic Profiling and the Metabolome-Wide Association Study: Significance Level For Biomarker Identification

(2010) Marc Chadeau-Hyam et al.   JOURNAL OF PROTEOME RESEARCH

MSEA: a web-based tool to identify biologically meaningful patterns in quantitative metabolomic data

(2010) J. Xia et al.   NUCLEIC ACIDS RESEARCH

Metabolic Footprint of Diabetes: A Multiplatform Metabolomics Study in an Epidemiological Setting

(2010) Karsten Suhre et al.   PLoS One

Plasma Metabolomic Profiles Reflective of Glucose Homeostasis in Non-Diabetic and Type 2 Diabetic Obese African-American Women

(2010) Oliver Fiehn et al.   PLoS One

Assessment of Claims of Improved Prediction Beyond the Framingham Risk Score

(2009) Ioanna Tzoulaki   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

Analytical and statistical approaches to metabolomics research

(2009) Haleem J. Issaq et al.   JOURNAL OF SEPARATION SCIENCE

Capillary electrophoresis mass spectrometry-based saliva metabolomics identified oral, breast and pancreatic cancer-specific profiles

(2009) Masahiro Sugimoto et al.   Metabolomics

Metabolic Phenotyping in Health and Disease

(2008) Elaine Holmes et al.   CELL

Human metabolic phenotype diversity and its association with diet and blood pressure

(2008) Elaine Holmes et al.   NATURE

Systems biology: Metabonomics

(2008) Jeremy K. Nicholson et al.   NATURE

MassTRIX: mass translator into pathways

(2008) K. Suhre et al.   NUCLEIC ACIDS RESEARCH

Liquid chromatography and ultra-performance liquid chromatography–mass spectrometry fingerprinting of human urine

(2007) Helen G. Gika et al.   JOURNAL OF CHROMATOGRAPHY A

Analytical technologies for metabonomics and metabolomics, and multi-omic information recovery

(2007) John C. Lindon et al.   TRAC-TRENDS IN ANALYTICAL CHEMISTRY