Development of a Biosensor Platform for Phenolic Compounds Using a Transition Ligand Strategy

Engineering and application of a biosensor with focused ligand specificity

(2020) Dennis Della Corte et al.   Nature Communications

Displaced by Deceivers: Prevention of Biosensor Cross-Talk Is Pivotal for Successful Biosensor-Based High-Throughput Screening Campaigns

(2019) Lion Konstantin Flachbart et al.   ACS Synthetic Biology

Directed Evolution of Protein Catalysts

(2018) Cathleen Zeymer et al.   Annual Review of Biochemistry

Corynebacterium glutamicum as platform for the production of hydroxybenzoic acids

(2018) Nicolai Kallscheuer et al.   Microbial Cell Factories

TopScore: Using deep neural networks and large diverse datasets for accurate protein model quality assessment

(2018) Daniel Mulnaes et al.   Journal of Chemical Theory and Computation

New engineered phenolic biosensors based on the AraC regulatory protein

(2018) C S Frei et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Cytometry meets next-generation sequencing – RNA-Seq of sorted subpopulations reveals regional replication and iron-triggered prophage induction in Corynebacterium glutamicum

(2018) Raphael Freiherr von Boeselager et al.   Scientific Reports

Microbial production of natural and non‐natural monolignols with Escherichia coli

(2018) Jennifer Aschenbrenner et al.   CHEMBIOCHEM

Converging a Knowledge-Based Scoring Function: DrugScore2018

(2018) Jonas Dittrich et al.   Journal of Chemical Information and Modeling

Development of a Bacterial Biosensor for Rapid Screening of Yeast p-Coumaric Acid Production

(2017) Solvej Siedler et al.   ACS Synthetic Biology

A microbial sensor for organophosphate hydrolysis exploiting an engineered specificity switch in a transcription factor

(2016) Ramesh K. Jha et al.   NUCLEIC ACIDS RESEARCH

CDD/SPARCLE: functional classification of proteins via subfamily domain architectures

(2016) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

CMRegNet–An interspecies reference database for corynebacterial and mycobacterial regulatory networks

(2015) Vinicius A. C. Abreu et al.   BMC GENOMICS

Long-Time-Step Molecular Dynamics through Hydrogen Mass Repartitioning

(2015) Chad W. Hopkins et al.   Journal of Chemical Theory and Computation

ff14SB: Improving the Accuracy of Protein Side Chain and Backbone Parameters from ff99SB

(2015) James A. Maier et al.   Journal of Chemical Theory and Computation

Design of an ectoine-responsive AraC mutant and its application in metabolic engineering of ectoine biosynthesis

(2015) Wei Chen et al.   METABOLIC ENGINEERING

Engineering an allosteric transcription factor to respond to new ligands

(2015) Noah D Taylor et al.   NATURE METHODS

Rosetta comparative modeling for library design: Engineering alternative inducer specificity in a transcription factor

(2015) Ramesh K. Jha et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Looking for the pick of the bunch: high-throughput screening of producing microorganisms with biosensors

(2014) Marcus Schallmey et al.   CURRENT OPINION IN BIOTECHNOLOGY

CDD: NCBI's conserved domain database

(2014) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

RegPrecise 3.0 – A resource for genome-scale exploration of transcriptional regulation in bacteria

(2013) Pavel S Novichkov et al.   BMC GENOMICS

Modulating protein stability - directed evolution strategies for improved protein function

(2013) Raymond D. Socha et al.   FEBS Journal

PTRAJ and CPPTRAJ: Software for Processing and Analysis of Molecular Dynamics Trajectory Data

(2013) Daniel R. Roe et al.   Journal of Chemical Theory and Computation

Molecular Dynamics Simulations and Structure-Guided Mutagenesis Provide Insight into the Architecture of the Catalytic Core of the Ectoine Hydroxylase

(2013) Nils Widderich et al.   JOURNAL OF MOLECULAR BIOLOGY

Screening for Enhanced Triacetic Acid Lactone Production by Recombinant Escherichia coli Expressing a Designed Triacetic Acid Lactone Reporter

(2013) Shuang-Yan Tang et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

New and continuing developments at PROSITE

(2012) Christian J. A. Sigrist et al.   NUCLEIC ACIDS RESEARCH

EcoCyc: fusing model organism databases with systems biology

(2012) Ingrid M. Keseler et al.   NUCLEIC ACIDS RESEARCH

SeSaM-Tv-II Generates a Protein Sequence Space that is Unobtainable by epPCR

(2011) Hemanshu Mundhada et al.   CHEMBIOCHEM

Design and Application of a Mevalonate-Responsive Regulatory Protein

(2010) Shuang-Yan Tang et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

CDD: a Conserved Domain Database for the functional annotation of proteins

(2010) A. Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

The baffled microtiter plate: Increased oxygen transfer and improved online monitoring in small scale fermentations

(2009) Matthias Funke et al.   BIOTECHNOLOGY AND BIOENGINEERING

Validation of a high-throughput fermentation system based on online monitoring of biomass and fluorescence in continuously shaken microtiter plates

(2009) Frank Kensy et al.   Microbial Cell Factories

Inducer responses of BenM, a LysR-type transcriptional regulator fromAcinetobacter baylyiADP1

(2009) Sarah H. Craven et al.   MOLECULAR MICROBIOLOGY

Enzymatic assembly of DNA molecules up to several hundred kilobases

(2009) Daniel G Gibson et al.   NATURE METHODS

AraC Regulatory Protein Mutants with Altered Effector Specificity

(2008) Shuang-Yan Tang et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

GLUE-IT and PEDEL-AA: new programmes for analyzing protein diversity in randomized libraries

(2008) A. E. Firth et al.   NUCLEIC ACIDS RESEARCH

Very fast prediction and rationalization of pKa values for protein-ligand complexes

(2008) Delphine C. Bas et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS