CMRegNet–An interspecies reference database for corynebacterial and mycobacterial regulatory networks

The Mycobacterium tuberculosis regulatory network and hypoxia

(2013) James E. Galagan et al.   NATURE

Density parameter estimation for finding clusters of homologous proteins—tracing actinobacterial pathogenicity lifestyles

(2012) Richard Röttger et al.   BIOINFORMATICS

How Little Do We Actually Know? On the Size of Gene Regulatory Networks

(2012) Richard Rottger et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

High-resolution detection of DNA binding sites of the global transcriptional regulator GlxR in Corynebacterium glutamicum

(2012) B. Jungwirth et al.   MICROBIOLOGY-SGM

RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more

(2012) Heladia Salgado et al.   NUCLEIC ACIDS RESEARCH

MEME-ChIP: motif analysis of large DNA datasets

(2011) Philip Machanick et al.   BIOINFORMATICS

Genome-Wide Identification of In Vivo Binding Sites of GlxR, a Cyclic AMP Receptor Protein-Type Regulator in Corynebacterium glutamicum

(2011) K. Toyoda et al.   JOURNAL OF BACTERIOLOGY

CoryneRegNet 6.0--Updated database content, new analysis methods and novel features focusing on community demands

(2011) J. Pauling et al.   NUCLEIC ACIDS RESEARCH

Mycobacterium leprae: genes, pseudogenes and genetic diversity

(2010) Pushpendra Singh et al.   Future Microbiology

Partitioning biological data with transitivity clustering

(2010) Tobias Wittkop et al.   NATURE METHODS

On the power and limits of evolutionary conservation—unraveling bacterial gene regulatory networks

(2010) Jan Baumbach   NUCLEIC ACIDS RESEARCH

RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)

(2010) S. Gama-Castro et al.   NUCLEIC ACIDS RESEARCH

Role of Streptococcus pneumoniae in Hospitalization for Acute Community-acquired Pneumonia Associated With Culture-confirmed Mycobacterium tuberculosis in Children

(2010) David P. Moore et al.   PEDIATRIC INFECTIOUS DISEASE JOURNAL

TB database 2010: Overview and update

(2010) James E. Galagan et al.   TUBERCULOSIS

Immunogenicity of Novel DosR Regulon-Encoded Candidate Antigens of Mycobacterium tuberculosis in Three High-Burden Populations in Africa

(2009) G. F. Black et al.   Clinical and Vaccine Immunology

Comparative genomic and phylogeographic analysis of Mycobacterium leprae

(2009) Marc Monot et al.   NATURE GENETICS

Integrated analysis and reconstruction of microbial transcriptional gene regulatory networks using CoryneRegNet

(2009) Jan Baumbach et al.   Nature Protocols

From Corynebacterium glutamicum to Mycobacterium tuberculosis--towards transfers of gene regulatory networks and integrated data analyses with MycoRegNet

(2009) J. Krawczyk et al.   NUCLEIC ACIDS RESEARCH

Database resources of the National Center for Biotechnology Information

(2009) Eric W. Sayers et al.   NUCLEIC ACIDS RESEARCH

MicrobesOnline: an integrated portal for comparative and functional genomics

(2009) P. S. Dehal et al.   NUCLEIC ACIDS RESEARCH

The GlxR regulon of the amino acid producer Corynebacterium glutamicum: In silico and in vitro detection of DNA binding sites of a global transcription regulator

(2008) Thomas A. Kohl et al.   JOURNAL OF BIOTECHNOLOGY