Cytometry meets next-generation sequencing – RNA-Seq of sorted subpopulations reveals regional replication and iron-triggered prophage induction in Corynebacterium glutamicum

Resolving host–pathogen interactions by dual RNA-seq

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Dual RNA-seq unveils noncoding RNA functions in host–pathogen interactions

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Silencing of cryptic prophages inCorynebacterium glutamicum

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RNA-seq based transcriptomic analysis of single bacterial cells

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Live cell imaging of SOS and prophage dynamics in isogenic bacterial populations

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Single prokaryotic cell isolation and total transcript amplification protocol for transcriptomic analysis

(2015) Yun Kang et al.   Nature Protocols

A functional perspective on phenotypic heterogeneity in microorganisms

(2015) Martin Ackermann   NATURE REVIEWS MICROBIOLOGY

Full-length single-cell RNA-seq applied to a viral human cancer: applications to HPV expression and splicing analysis in HeLa S3 cells

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Iron Triggers λSo Prophage Induction and Release of Extracellular DNA in Shewanella oneidensis MR-1 Biofilms

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Full-length RNA-seq from single cells using Smart-seq2

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Subpopulation-proteomics reveal growth rate, but not cell cycling, as a major impact on protein composition in Pseudomonas putida KT2440

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Construction of a Prophage-Free Variant of Corynebacterium glutamicum ATCC 13032 for Use as a Platform Strain for Basic Research and Industrial Biotechnology

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Analysis of SOS-Induced Spontaneous Prophage Induction in Corynebacterium glutamicum at the Single-Cell Level

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Microfluidic Picoliter Bioreactor for Microbial Single-cell Analysis: Fabrication, System Setup, and Operation

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A disposable picolitre bioreactor for cultivation and investigation of industrially relevant bacteria on the single cell level

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Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells

(2012) Daniel Ramsköld et al.   NATURE BIOTECHNOLOGY

Fast gapped-read alignment with Bowtie 2

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Monitoring of population dynamics ofCorynebacterium glutamicumby multiparameter flow cytometry

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Transcript amplification from single bacterium for transcriptome analysis

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Lag Phase Is a Distinct Growth Phase That Prepares Bacteria for Exponential Growth and Involves Transient Metal Accumulation

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Advanced tool for characterization of microbial cultures by combining cytomics and proteomics

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Chemical and biological single cell analysis

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Single-Cell Ecophysiology of Microbes as Revealed by Raman Microspectroscopy or Secondary Ion Mass Spectrometry Imaging

(2009) Michael Wagner   Annual Review of Microbiology

Genetic makeup of the Corynebacterium glutamicum LexA regulon deduced from comparative transcriptomics and in vitro DNA band shift assays

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DivS, a novel SOS-inducible cell-division suppressor inCorynebacterium glutamicum

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Enzymatic assembly of DNA molecules up to several hundred kilobases

(2009) Daniel G Gibson et al.   NATURE METHODS

Run-Off Replication of Host-Adaptability Genes Is Associated with Gene Transfer Agents in the Genome of Mouse-Infecting Bartonella grahamii

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The Defective Prophage Pool of Escherichia coli O157: Prophage–Prophage Interactions Potentiate Horizontal Transfer of Virulence Determinants

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Population Heterogeneity in Corynebacterium glutamicum ATCC 13032 Caused by Prophage CGP3

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