The emergence of molecular profiling and omics techniques in seagrass biology; furthering our understanding of seagrasses

Transcript profiling reveals that cysteine protease inhibitors are up-regulated in tuber sprouts after extended darkness

(2016) Carolina Grandellis et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Topological characteristics of target genes regulated by abiotic-stress-responsible miRNAs in a rice interactome network

(2016) Linzhong Zhang et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

PlanTE-MIR DB: a database for transposable element-related microRNAs in plant genomes

(2016) Alan P. R. Lorenzetti et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Functional Analysis of VvBG1 During Fruit Development and Ripening of Grape

(2016) Haifeng Jia et al.   JOURNAL OF PLANT GROWTH REGULATION

Lack of genetic variation in the response of a trematode parasite to ocean acidification

(2016) Hannah Harland et al.   MARINE BIOLOGY

The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea

(2016) Jeanine L. Olsen et al.   NATURE

Identification of light-harvesting chlorophyll a/b-binding protein genes of Zostera marina L. and their expression under different environmental conditions

(2016) Fanna Kong et al.   Journal of Ocean University of China

24-Epibrassinoslide enhances plant tolerance to stress from low temperatures and poor light intensities in tomato (Lycopersicon esculentum Mill.)

(2015) Lirong Cui et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Wild soybean roots depend on specific transcription factors and oxidation reduction related genesin response to alkaline stress

(2015) Huizi DuanMu et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Insights from 20 years of bacterial genome sequencing

(2015) Miriam Land et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Declines of seagrasses in a tropical harbour, North Queensland, Australia, are not the result of a single event

(2015) Skye McKenna et al.   JOURNAL OF BIOSCIENCES

Genome-wide survey of the seagrass Zostera muelleri suggests modification of the ethylene signalling network

(2015) Agnieszka A. Golicz et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genotype-specific responses to light stress in eelgrass Zostera marina, a marine foundation plant

(2015) T Salo et al.   MARINE ECOLOGY PROGRESS SERIES

Diurnal effects of anoxia on the metabolome of the seagrass Zostera marina

(2015) Harald Hasler-Sheetal et al.   Metabolomics

Sulfide Intrusion and Detoxification in the Seagrass Zostera marina

(2015) Harald Hasler-Sheetal et al.   PLoS One

Purification of intact chloroplasts from marine plantPosidonia oceanicasuitable for organelle proteomics

(2015) Amalia Piro et al.   PROTEOMICS

Evaluation of Reference Genes for RT-qPCR Studies in the Seagrass Zostera muelleri Exposed to Light Limitation

(2015) M. Schliep et al.   Scientific Reports

The modulation of leaf metabolism plays a role in salt tolerance of Cymodocea nodosa exposed to hypersaline stress in mesocosms

(2015) Amalia Piro et al.   Frontiers in Plant Science

Genotype-specific responses to light stress in eelgrass Zostera marina, a marine foundation plant

(2015) T Salo et al.   MARINE ECOLOGY PROGRESS SERIES

Development of Microsatellite Loci for the Endangered SeagrassZostera japonica(Zosteraceae)

(2015) Xiaomei Zhang et al.   Applications in Plant Sciences

New highly polymorphic microsatellite markers for the aquatic angiosperm Ruppia cirrhosa reveal population diversity and differentiation

(2014) J. Martínez-Garrido et al.   GENOME

Changes in the global value of ecosystem services

(2014) Robert Costanza et al.   GLOBAL ENVIRONMENTAL CHANGE-HUMAN AND POLICY DIMENSIONS

Response of the seagrass Posidonia oceanica to different light environments: Insights from a combined molecular and photo-physiological study

(2014) E. Dattolo et al.   MARINE ENVIRONMENTAL RESEARCH

Genome-wide transcriptomic responses of the seagrasses Zostera marina and Nanozostera noltii under a simulated heatwave confirm functional types

(2014) Susanne U. Franssen et al.   Marine Genomics

Oxic microshield and local pH enhancement protectsZostera muellerifrom sediment derived hydrogen sulphide

(2014) Kasper Elgetti Brodersen et al.   NEW PHYTOLOGIST

Isolation and characterization of novel microsatellite markers forCymodocea serrulata(Cymodoceaceae), a seagrass distributed widely in the Indo-Pacific region

(2014) Dan M. Arriesgado et al.   PLANT SPECIES BIOLOGY

Seagrass Proliferation Precedes Mortality during Hypo-Salinity Events: A Stress-Induced Morphometric Response

(2014) Catherine J. Collier et al.   PLoS One

Current European Labyrinthula zosterae Are Not Virulent and Modulate Seagrass (Zostera marina) Defense Gene Expression

(2014) Janina Brakel et al.   PLoS One

De Novo Assembly and Characterization of the Transcriptome of Seagrass Zostera marina Using Illumina Paired-End Sequencing

(2014) Fanna Kong et al.   PLoS One

A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome

(2014) et al.   SCIENCE

Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome

(2014) B. Chalhoub et al.   SCIENCE

Development of Microsatellite Markers for a Tropical Seagrass,Syringodium filiforme(Cymodoceaceae)

(2014) Alexandra L. Bijak et al.   Applications in Plant Sciences

Generation and analysis of expressed sequence tags fromthe salt-tolerant eelgrass species, Zostera marina

(2013) Fanna Kong et al.   ACTA OCEANOLOGICA SINICA

Continued expansion of the trans-Atlantic invasive marine angiosperm Halophila stipulacea in the Eastern Caribbean

(2013) Demian A. Willette et al.   AQUATIC BOTANY

Heat and water stress induce unique transcriptional signatures of heat-shock proteins and transcription factors in grapevine

(2013) Margarida Rocheta et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

The RNA-seq approach to discriminate gene expression profiles in response to melatonin on cucumber lateral root formation

(2013) Na Zhang et al.   JOURNAL OF PINEAL RESEARCH

Low-Canopy Seagrass Beds Still Provide Important Coastal Protection Services

(2013) Marjolijn J. A. Christianen et al.   PLoS One

Phylogeny and temporal divergence of the seagrass family Zosteraceae using one nuclear and three chloroplast loci

(2013) J. A. Coyer et al.   SYSTEMATICS AND BIODIVERSITY

Isolation and characterization of twenty-four polymorphic microsatellite loci for the topical seagrass, Thalassia hemprichii

(2013) Benjamin J. Wainwright et al.   Conservation Genetics Resources

Isolation and characterization of eighteen polymorphic microsatellite loci for the topical seagrass, Syringodium isoetifolium

(2013) Benjamin J. Wainwright et al.   Conservation Genetics Resources

Microsatellite primer development for the seagrass Zostera nigricaulis (Zosteraceae)

(2013) Timothy M. Smith et al.   Conservation Genetics Resources

Development of microsatellite markers in a tropical seagrass Syringodium isoetifolium (Cymodoceaceae)

(2013) Yu Matsuki et al.   Conservation Genetics Resources

Development of novel microsatellite markers for Cymodocea rotundata Ehrenberg (Cymodoceaceae), a pioneer seagrass species widely distributed in the Indo-Pacific

(2013) Dan M. Arriesgado et al.   Conservation Genetics Resources

The First 50 Plant Genomes

(2013) Todd P. Michael et al.   Plant Genome

Acclimation to different depths by the marine angiosperm Posidonia oceanica: transcriptomic and proteomic profiles

(2013) Emanuela Dattolo et al.   Frontiers in Plant Science

Development of microsatellite primers of the largest seagrass, Enhalus acoroides (Hydrocharitaceae)

(2012) Hui Gao et al.   AMERICAN JOURNAL OF BOTANY

The Central Role of Dispersal in the Maintenance and Persistence of Seagrass Populations

(2012) Gary A. Kendrick et al.   BIOSCIENCE

Next generation sequencing and de novo transcriptome analysis of Costus pictus D. Don, a non-model plant with potent anti-diabetic properties

(2012) Ramasamy S Annadurai et al.   BMC GENOMICS

Seagrass reproductive effort as an ecological indicator of disturbance

(2012) Susana Cabaço et al.   ECOLOGICAL INDICATORS

Genome-wide identification of rice class I metallothionein gene: tissue expression patterns and induction in response to heavy metal stress

(2012) Neelam Gautam et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Genome-wide ChIP-seq mapping and analysis reveal butyrate-induced acetylation of H3K9 and H3K27 correlated with transcription activity in bovine cells

(2012) Joo Heon Shin et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Small RNA profiling of virus-infected grapevines: evidences for virus infection-associated and variety-specific miRNAs

(2012) Kashmir Singh et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Identifying core features of adaptive metabolic mechanisms for chronic heat stress attenuation contributing to systems robustness

(2012) Jenny Gu et al.   Integrative Biology

Reference genes assessment for the seagrass Posidonia oceanica in different salinity, pH and light conditions

(2012) Ilia Anna Serra et al.   MARINE BIOLOGY

Effects of light deficiency on genome methylation in Posidonia oceanica

(2012) M Greco et al.   MARINE ECOLOGY PROGRESS SERIES

Development of a DNA Barcoding System for Seagrasses: Successful but Not Simple

(2012) Christina Lucas et al.   PLoS One

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

Development of microsatellite markers for Thalassia hemprichii (Hydrocharitaceae), a widely distributed seagrass in the Indo-Pacific

(2012) Yu Matsuki et al.   Conservation Genetics Resources

Development of novel microsatellite markers in a tropical seagrass, Enhalus acoroides

(2012) Yuichi Nakajima et al.   Conservation Genetics Resources

Development of twenty-three novel microsatellite markers for the seagrass, Zostera muelleri from Australia

(2012) Craig D. H. Sherman et al.   Conservation Genetics Resources

Microsatellite primers for vulnerable seagrass Halophila beccarii (Hydrocharitaceae)

(2011) Kai Jiang et al.   AMERICAN JOURNAL OF BOTANY

A set of microsatellite primers for Zostera japonica (Zosteraceae)

(2011) Kai Jiang et al.   AMERICAN JOURNAL OF BOTANY

Extinction risk assessment of the world’s seagrass species

(2011) Frederick T. Short et al.   BIOLOGICAL CONSERVATION

Back to the sea twice: identifying candidate plant genes for molecular evolution to marine life

(2011) Lothar Wissler et al.   BMC EVOLUTIONARY BIOLOGY

A blueprint for blue carbon: toward an improved understanding of the role of vegetated coastal habitats in sequestering CO2

(2011) Elizabeth Mcleod et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

In Posidonia oceanica cadmium induces changes in DNA methylation and chromatin patterning

(2011) Maria Greco et al.   JOURNAL OF EXPERIMENTAL BOTANY

Photoacclimation of the seagrassHalophila stipulaceato the dim irradiance at its 48-meter depth limit

(2011) Yoni Sharon et al.   LIMNOLOGY AND OCEANOGRAPHY

Effects of a simulated heat wave on photophysiology and gene expression of high- and low-latitude populations of Zostera marina

(2011) G Winters et al.   MARINE ECOLOGY PROGRESS SERIES

Expressed sequence tags from heat-shocked seagrass Zostera noltii (Hornemann) from its southern distribution range

(2011) Sónia I. Massa et al.   Marine Genomics

A quantitative real-time polymerase chain reaction assay for the seagrass pathogen Labyrinthula zosterae

(2011) NINA BERGMANN et al.   Molecular Ecology Resources

Homeostatic response to hypoxia is regulated by the N-end rule pathway in plants

(2011) Daniel J. Gibbs et al.   NATURE

Genome sequence and analysis of the tuber crop potato

(2011) Xun Xu et al.   NATURE

Molecular chaperones in protein folding and proteostasis

(2011) F. Ulrich Hartl et al.   NATURE

Advances in Omics and Bioinformatics Tools for Systems Analyses of Plant Functions

(2011) K. Mochida et al.   PLANT AND CELL PHYSIOLOGY

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Transcriptomic resilience to global warming in the seagrass Zostera marina, a marine foundation species

(2011) S. U. Franssen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Isolation and characterization of microsatellite markers for Zostera marina and their cross-species amplification in Zostera caespitosa

(2011) Jie Peng et al.   Conservation Genetics Resources

Development and characterization of microsatellite markers for the seagrass Halodule wrightii

(2011) Patrick Larkin et al.   Conservation Genetics Resources

Microsatellite primers for Halophila ovalis and cross-amplification in H. minor (Hydrocharitaceae)

(2010) Na-Na Xu et al.   AMERICAN JOURNAL OF BOTANY

Widespread genetic mosaicism in the marine angiosperm Zostera marina is correlated with clonal reproduction

(2010) Thorsten B. H. Reusch et al.   EVOLUTIONARY ECOLOGY

Comparative transcriptomics for mangrove species: an expanding resource

(2010) Maheshi Dassanayake et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

The concept of population in clonal organisms: mosaics of temporally colonized patches are forming highly diverse meadows of Zostera marina in Brittany

(2010) R. BECHELER et al.   MOLECULAR ECOLOGY

Population-specificity of heat stress gene induction in northern and southern eelgrass Zostera marina populations under simulated global warming

(2010) NINA BERGMANN et al.   MOLECULAR ECOLOGY

Genome sequence of the palaeopolyploid soybean

(2010) Jeremy Schmutz et al.   NATURE

What can enzymes of C4 photosynthesis do for C3 plants under stress?

(2010) Veronika Doubnerová et al.   PLANT SCIENCE

Plant molecular stress responses face climate change

(2010) Ishita Ahuja et al.   TRENDS IN PLANT SCIENCE

Photosynthetic responses of Halophila stipulacea to a light gradient. II. Acclimations following transplantation

(2009) Y Sharon et al.   Aquatic Biology

Seagrass light acclimation: 2-DE protein analysis in Posidonia leaves grown in chronic low light conditions

(2009) Silvia Mazzuca et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

New evidence for habitat-specific selection in Wadden Sea Zostera marina populations revealed by genome scanning using SNP and microsatellite markers

(2009) Katharina Oetjen et al.   MARINE BIOLOGY

The Sorghum bicolor genome and the diversification of grasses

(2009) Andrew H. Paterson et al.   NATURE

PLAZA: A Comparative Genomics Resource to Study Gene and Genome Evolution in Plants

(2009) S. Proost et al.   PLANT CELL

Accelerating loss of seagrasses across the globe threatens coastal ecosystems

(2009) M. Waycott et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

Development and characterization of microsatellite loci in Ruppia maritima L. (Ruppiaceae)

(2009) Shuo Yu et al.   Conservation Genetics Resources

Characterisation of polymorphic microsatellite markers in the widespread Australian seagrass, Posidonia australis Hook. f. (Posidoniaceae), with cross-amplification in the sympatric P. sinuosa

(2009) E. A. Sinclair et al.   Conservation Genetics Resources

Dr. Zompo: an online data repository for Zostera marina and Posidonia oceanica ESTs

(2009) L. Wissler et al.   Database-The Journal of Biological Databases and Curation

Comparative Analysis of Expressed Sequence Tag (EST) Libraries in the Seagrass Zostera marina Subjected to Temperature Stress

(2008) Thorsten B. H. Reusch et al.   MARINE BIOTECHNOLOGY

Characterization of single nucleotide polymorphism markers for eelgrass (Zostera marina)

(2008) STEVEN FERBER et al.   Molecular Ecology Resources

The evolution of inorganic carbon concentrating mechanisms in photosynthesis

(2008) J. A Raven et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genomic Plasticity and the Diversity of Polyploid Plants

(2008) A. R. Leitch et al.   SCIENCE