Chlamydomonas proteases: classification, phylogeny, and molecular mechanisms

Structure, Function and Substrates of Clp AAA+ protease systems in cyanobacteria, plastids and apicoplasts; a comparative analysis

(2021) Imen Bouchnak et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The ATG4 protease integrates redox and stress signals to regulate autophagy

(2021) María Esther Pérez-Pérez et al.   JOURNAL OF EXPERIMENTAL BOTANY

Oxidation inhibits autophagy protein deconjugation from phagosomes to sustain MHC class II restricted antigen presentation

(2021) Laure-Anne Ligeon et al.   Nature Communications

SUMO Protease SMT7 Modulates Ribosomal Protein L30 and Regulates Cell-size Checkpoint Function

(2020) Yen-Ling Lin et al.   PLANT CELL

Overexpression of Arabidopsis aspartic protease APA1 gene confers drought tolerance

(2020) D’Ippólito Sebastián et al.   PLANT SCIENCE

Proteolytic Proteoforms: Elusive Components of Hormonal Pathways?

(2020) Chen Liu et al.   TRENDS IN PLANT SCIENCE

Classification and Nomenclature of Metacaspases and Paracaspases: No More Confusion with Caspases

(2020) Elena A. Minina et al.   MOLECULAR CELL

TIM, a targeted insertional mutagenesis method utilizing CRISPR/Cas9 in Chlamydomonas reinhardtii

(2020) Tyler Picariello et al.   PLoS One

An epigenetic gene silencing pathway selectively acting on transgenic DNA in the green alga Chlamydomonas

(2020) Juliane Neupert et al.   Nature Communications

Caught green-handed: methods for in vivo detection and visualization of protease activity

(2019) Álvaro Daniel Fernández-Fernández et al.   JOURNAL OF EXPERIMENTAL BOTANY

Reduced expression of the proteolytically inactive FtsH members has impacts on the Darwinian fitness of Arabidopsis thaliana

(2019) Laxmi S Mishra et al.   JOURNAL OF EXPERIMENTAL BOTANY

A Series of Fortunate Events: Introducing Chlamydomonas as a Reference Organism

(2019) Patrice A. Salomé et al.   PLANT CELL

Role of ClpP in the Biogenesis and Degradation of RuBisCO and ATP Synthase in Chlamydomonas reinhardtii

(2019) Majeran et al.   Plants-Basel

Protease Substrate Identification Using N-terminomics

(2019) Shu Yue Luo et al.   ACS Chemical Biology

Sensitive determination of proteolytic proteoforms in limited microscale proteome samples

(2019) Samuel SH Weng et al.   MOLECULAR & CELLULAR PROTEOMICS

Diurnal.plant.tools: comparative transcriptomic and co-expression analyses of diurnal gene expression of the Archaeplastida kingdom

(2019) Jonathan Wei Xiong Ng et al.   PLANT AND CELL PHYSIOLOGY

The Chlamydomonas deg1c Mutant Accumulates Proteins Involved in High Light Acclimation

(2019) Jasmine Theis et al.   PLANT PHYSIOLOGY

Twenty-five years of nomenclature and classification of proteolytic enzymes

(2019) Neil D. Rawlings   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

The ATG conjugation systems in autophagy

(2019) Noboru Mizushima   CURRENT OPINION IN CELL BIOLOGY

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

The timescale of early land plant evolution

(2018) Jennifer L. Morris et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Lumenal exposed regions of the D1 protein of PSII are long enough to be degraded by the chloroplast Deg1 protease

(2018) Ronit Rimon Knopf et al.   Scientific Reports

FtsH Protease in the Thylakoid Membrane: Physiological Functions and the Regulation of Protease Activity

(2018) Yusuke Kato et al.   Frontiers in Plant Science

SUMO-Mediated Regulation of Nuclear Functions and Signaling Processes

(2018) Xiaolan Zhao   MOLECULAR CELL

Birth of a Photosynthetic Chassis: A MoClo Toolkit Enabling Synthetic Biology in the Microalga Chlamydomonas reinhardtii

(2018) Pierre Crozet et al.   ACS Synthetic Biology

Comprehensive analysis of Lon proteases in plants highlights independent gene duplication events

(2018) Dikran Tsitsekian et al.   JOURNAL OF EXPERIMENTAL BOTANY

The Pfam protein families database in 2019

(2018) Sara El-Gebali et al.   NUCLEIC ACIDS RESEARCH

The High Light Response and Redox Control of Thylakoid FtsH Protease in Chlamydomonas reinhardtii

(2017) Fei Wang et al.   Molecular Plant

Quantitative proteomics in plant protease substrate identification

(2017) Fatih Demir et al.   NEW PHYTOLOGIST

Life and death of proteins after protease cleavage: protein degradation by the N-end rule pathway

(2017) Nico Dissmeyer et al.   NEW PHYTOLOGIST

Limited and digestive proteolysis: crosstalk between evolutionary conserved pathways

(2017) Elena A. Minina et al.   NEW PHYTOLOGIST

Down-regulation of BnDA1, whose gene locus is associated with the seeds weight, improves the seeds weight and organ size in Brassica napus

(2017) Jie-Li Wang et al.   PLANT BIOTECHNOLOGY JOURNAL

Changes in specific protein degradation rates inArabidopsis thalianareveal multiple roles of Lon1 in mitochondrial protein homeostasis

(2017) Lei Li et al.   PLANT JOURNAL

Building a multipurpose insertional mutant library for forward and reverse genetics in Chlamydomonas

(2017) Xi Cheng et al.   Plant Methods

Matrix metalloproteinases operate redundantly in Arabidopsis immunity against necrotrophic and biotrophic fungal pathogens

(2017) Puyan Zhao et al.   PLoS One

Emerging role of Lon protease as a master regulator of mitochondrial functions

(2016) Marcello Pinti et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

SUMO proteases: uncovering the roles of deSUMOylation in plants

(2016) Gary Yates et al.   JOURNAL OF EXPERIMENTAL BOTANY

An Indexed, Mapped Mutant Library Enables Reverse Genetics Studies of Biological Processes in Chlamydomonas reinhardtii

(2016) Xiaobo Li et al.   PLANT CELL

Control of Autophagy in Chlamydomonas Is Mediated through Redox-Dependent Inactivation of the ATG4 Protease

(2016) María Esther Pérez-Pérez et al.   PLANT PHYSIOLOGY

Forever Young: The Role of Ubiquitin Receptor DA1 and E3 Ligase BIG BROTHER in Controlling Leaf Growth and Development

(2016) Hannes Vanhaeren et al.   PLANT PHYSIOLOGY

TheChlamydomonasheat stress response

(2015) Michael Schroda et al.   PLANT JOURNAL

TheChlamydomonascell cycle

(2015) Frederick R. Cross et al.   PLANT JOURNAL

Copper economy inChlamydomonas: Prioritized allocation and reallocation of copper to respiration vs. photosynthesis

(2015) Janette Kropat et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Loss of chloroplast ClpP elicits an autophagy-like response inChlamydomonas

(2014) Silvia Ramundo et al.   Autophagy

Mutation of theArabidopsisLON2 peroxisomal protease enhances pexophagy

(2014) Bonnie Bartel et al.   Autophagy

The yeast autophagy protease Atg4 is regulated by thioredoxin

(2014) María Esther Pérez-Pérez et al.   Autophagy

Nitric Oxide-Triggered Remodeling of Chloroplast Bioenergetics and Thylakoid Proteins upon Nitrogen Starvation in Chlamydomonas reinhardtii

(2014) L. Wei et al.   PLANT CELL

Thylakoid FtsH Protease Contributes to Photosystem II and Cytochrome b6f Remodeling in Chlamydomonas reinhardtii under Stress Conditions

(2014) A. Malnoe et al.   PLANT CELL

Conditional Depletion of the Chlamydomonas Chloroplast ClpP Protease Activates Nuclear Genes Involved in Autophagy and Plastid Protein Quality Control

(2014) S. Ramundo et al.   PLANT CELL

Repression of Essential Chloroplast Genes Reveals New Signaling Pathways and Regulatory Feedback Loops inChlamydomonas

(2013) Silvia Ramundo et al.   PLANT CELL

Disrupting Autophagy Restores Peroxisome Function to an Arabidopsis lon2 Mutant and Reveals a Role for the LON2 Protease in Peroxisomal Matrix Protein Degradation

(2013) L. M. Farmer et al.   PLANT CELL

Functional characterization of an Arabidopsis prolyl aminopeptidase AtPAP1 in response to salt and drought stresses

(2013) Xiaoli Sun et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Differential processing of Arabidopsis ubiquitin-like Atg8 autophagy proteins by Atg4 cysteine proteases

(2013) J. Woo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ancient gene transfer from algae to animals: Mechanisms and evolutionary significance

(2012) Ting Ni et al.   BMC EVOLUTIONARY BIOLOGY

The family of Deg/HtrA proteases in plants

(2012) Holger Schuhmann et al.   BMC PLANT BIOLOGY

Function and regulation of SUMO proteases

(2012) Christopher M. Hickey et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Cooperative D1 Degradation in the Photosystem II Repair Mediated by Chloroplastic Proteases in Arabidopsis

(2012) Y. Kato et al.   PLANT PHYSIOLOGY

Loss of Lon1 in Arabidopsis Changes the Mitochondrial Proteome Leading to Altered Metabolite Profiles and Growth Retardation without an Accumulation of Oxidative Damage

(2012) C. Solheim et al.   PLANT PHYSIOLOGY

Chlapsin, a chloroplastidial aspartic proteinase from the green algae Chlamydomonas reinhardtii

(2012) Carla Malaquias Almeida et al.   PLANTA

Sumo-dependent substrate targeting of the SUMO protease Ulp1

(2011) Zachary C Elmore et al.   BMC BIOLOGY

Metacaspases

(2011) L Tsiatsiani et al.   CELL DEATH AND DIFFERENTIATION

Asparagine Peptide Lyases

(2011) Neil David Rawlings et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Structural adaptation of the plant protease Deg1 to repair photosystem II during light exposure

(2011) Juliane Kley et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Deg proteases and their role in protein quality control and processing in different subcellular compartments of the plant cell

(2011) Holger Schuhmann et al.   PHYSIOLOGIA PLANTARUM

Systems Biology Approach inChlamydomonasReveals Connections between Copper Nutrition and Multiple Metabolic Steps

(2011) Madeli Castruita et al.   PLANT CELL

The Clp protease system; a central component of the chloroplast protease network

(2010) Paul Dominic B. Olinares et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Identification and characterization of a bacterial glutamic peptidase

(2010) Kenneth Jensen et al.   BMC BIOCHEMISTRY

Algal Genes in the Closest Relatives of Animals

(2010) G. Sun et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Stromal Chloroplast Deg7 Protease Participates in the Repair of Photosystem II after Photoinhibition in Arabidopsis

(2010) X. Sun et al.   PLANT PHYSIOLOGY

Multistep Processing of an Insertion Sequence in an Essential Subunit of the Chloroplast ClpP Complex

(2009) Benoit Derrien et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Chlamydomonas Hatching Enzyme, Sporangin, is Expressed in Specific Phases of the Cell Cycle and is Localized to the Flagella of Daughter Cells Within the Sporangial Cell Wall

(2009) Takeaki Kubo et al.   PLANT AND CELL PHYSIOLOGY

Arabidopsis LON2 Is Necessary for Peroxisomal Function and Sustained Matrix Protein Import

(2009) M. J. Lingard et al.   PLANT PHYSIOLOGY

Plant Proteases: From Phenotypes to Molecular Mechanisms

(2008) Renier A. L. van der Hoorn   Annual Review of Plant Biology

A Suppressor Screen in Chlamydomonas Identifies Novel Components of the Retinoblastoma Tumor Suppressor Pathway

(2008) S.-C. Fang et al.   GENETICS

Proteases: Multifunctional Enzymes in Life and Disease

(2008) Carlos López-Otín et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Role of Lon1 protease in post-germinative growth and maintenance of mitochondrial function in Arabidopsis thaliana

(2008) Stamatis Rigas et al.   NEW PHYTOLOGIST

The Degradome database: mammalian proteases and diseases of proteolysis

(2008) V. Quesada et al.   NUCLEIC ACIDS RESEARCH

The dynamic thiol–disulphide redox proteome of the Arabidopsis thaliana chloroplast as revealed by differential electrophoretic mobility

(2008) Elke Ströher et al.   PHYSIOLOGIA PLANTARUM