Quantitative proteomics in plant protease substrate identification

Protein Degradation Rate in Arabidopsis thaliana Leaf Growth and Development

(2017) Lei Li et al.   PLANT CELL

Changes in specific protein degradation rates inArabidopsis thalianareveal multiple roles of Lon1 in mitochondrial protein homeostasis

(2017) Lei Li et al.   PLANT JOURNAL

Progress in Top-Down Proteomics and the Analysis of Proteoforms

(2016) Timothy K. Toby et al.   Annual Review of Analytical Chemistry

Peptidase specificity from the substrate cleavage collection in the MEROPS database and a tool to measure cleavage site conservation

(2016) Neil D. Rawlings   BIOCHIMIE

The versatility of the mitochondrial presequence processing machinery: cleavage, quality control and turnover

(2016) Daniel Poveda-Huertes et al.   CELL AND TISSUE RESEARCH

Drought and Recovery: Independently Regulated Processes Highlighting the Importance of Protein Turnover Dynamics and Translational Regulation inMedicago truncatula

(2016) David Lyon et al.   MOLECULAR & CELLULAR PROTEOMICS

Identification of Protease Specificity by Combining Proteome-Derived Peptide Libraries and Quantitative Proteomics

(2016) Martin L. Biniossek et al.   MOLECULAR & CELLULAR PROTEOMICS

Mass-spectrometric exploration of proteome structure and function

(2016) Ruedi Aebersold et al.   NATURE

From start to finish: amino-terminal protein modifications as degradation signals in plants

(2016) Daniel J. Gibbs et al.   NEW PHYTOLOGIST

SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations

(2016) Cornelia M. Hooper et al.   NUCLEIC ACIDS RESEARCH

The Increasing Impact of Activity-Based Protein Profiling in Plant Science

(2016) Kyoko Morimoto et al.   PLANT AND CELL PHYSIOLOGY

The Plastoglobule-Localized Metallopeptidase PGM48 Is a Positive Regulator of Senescence in Arabidopsis thaliana

(2016) Nazmul H. Bhuiyan et al.   PLANT CELL

Precursor processing for plant peptide hormone maturation by subtilisin-like serine proteinases

(2016) Katharina Schardon et al.   SCIENCE

Protein Maturation and Proteolysis in Plant Plastids, Mitochondria, and Peroxisomes

(2015) Klaas J. van Wijk   Annual Review of Plant Biology

Proteomic approaches to identify substrates of the three Deg/HtrA proteases of the cyanobacteriumSynechocystissp. PCC 6803

(2015) Lam X. Tam et al.   BIOCHEMICAL JOURNAL

Organization, function and substrates of the essential Clp protease system in plastids

(2015) Kenji Nishimura et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Identification of cleavage sites and substrate proteins for two mitochondrial intermediate peptidases in Arabidopsis thaliana

(2015) Chris Carrie et al.   JOURNAL OF EXPERIMENTAL BOTANY

Twenty years of theMEROPSdatabase of proteolytic enzymes, their substrates and inhibitors

(2015) Neil D. Rawlings et al.   NUCLEIC ACIDS RESEARCH

Characterization of Chloroplast Protein Import without Tic56, a Component of the 1-Megadalton Translocon at the Inner Envelope Membrane of Chloroplasts

(2015) Daniel Köhler et al.   PLANT PHYSIOLOGY

INTERMEDIATE CLEAVAGE PEPTIDASE55 Modifies Enzyme Amino Termini and Alters Protein Stability in Arabidopsis Mitochondria

(2015) Shaobai Huang et al.   PLANT PHYSIOLOGY

Quantitative proteomics analysis of the Arg/N-end rule pathway of targeted degradation in Arabidopsis roots

(2015) Hongtao Zhang et al.   PROTEOMICS

An improved workflow for quantitative N-terminal charge-based fractional diagonal chromatography (ChaFRADIC) to study proteolytic events inArabidopsis thaliana

(2015) A. Saskia Venne et al.   PROTEOMICS

Identification of protein N-termini in Cyanophora paradoxa cyanelles: transit peptide composition and sequence determinants for precursor maturation

(2015) Daniel Köhler et al.   Frontiers in Plant Science

Protein turnover in plant biology

(2015) Clark J. Nelson et al.   Nature Plants

Proteome TopFIND 3.0 with TopFINDer and PathFINDer: database and analysis tools for the association of protein termini to pre- and post-translational events

(2014) Nikolaus Fortelny et al.   NUCLEIC ACIDS RESEARCH

Proteins with High Turnover Rate in Barley Leaves Estimated by Proteome Analysis Combined with in Planta Isotope Labeling

(2014) Clark J. Nelson et al.   PLANT PHYSIOLOGY

Network Analyses Reveal Pervasive Functional Regulation Between Proteases in the Human Protease Web

(2014) Nikolaus Fortelny et al.   PLOS BIOLOGY

Family-wide characterization of matrix metalloproteinases fromArabidopsis thalianareveals their distinct proteolytic activity and cleavage site specificity

(2013) Giada Marino et al.   BIOCHEMICAL JOURNAL

Protein Analysis by Shotgun/Bottom-up Proteomics

(2013) Yaoyang Zhang et al.   CHEMICAL REVIEWS

Contemporary positional proteomics strategies to study protein processing

(2013) Kim Plasman et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Protein TAILS: when termini tell tales of proteolysis and function

(2013) Philipp F Lange et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Novel Highly Sensitive, Specific, and Straightforward Strategy for Comprehensive N-Terminal Proteomics Reveals Unknown Substrates of the Mitochondrial Peptidase Icp55

(2013) A. Saskia Venne et al.   JOURNAL OF PROTEOME RESEARCH

Proteoform: a single term describing protein complexity

(2013) Lloyd M Smith et al.   NATURE METHODS

The Arabidopsis METACASPASE9 Degradome

(2013) L. Tsiatsiani et al.   PLANT CELL

ClpS1 Is a Conserved Substrate Selector for the Chloroplast Clp Protease System in Arabidopsis

(2013) K. Nishimura et al.   PLANT CELL

Proteomic Amino-Termini Profiling Reveals Targeting Information for Protein Import into Complex Plastids

(2013) Pitter F. Huesgen et al.   PLoS One

Plant SILAC: Stable-Isotope Labelling with Amino Acids of Arabidopsis Seedlings for Quantitative Proteomics

(2013) Dominika Lewandowska et al.   PLoS One

The expanding field of SILAC

(2012) Shao-En Ong   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Processing and Subcellular Trafficking of ER-Tethered EIN2 Control Response to Ethylene Gas

(2012) H. Qiao et al.   SCIENCE

N- and C-terminal degradomics: new approaches to reveal biological roles for plant proteases from substrate identification

(2011) Pitter F. Huesgen et al.   PHYSIOLOGIA PLANTARUM

ePlant and the 3D Data Display Initiative: Integrative Systems Biology on the World Wide Web

(2011) Geoffrey Fucile et al.   PLoS One

Isotopic labeling of terminal amines in complex samples identifies protein N-termini and protease cleavage products

(2010) Oded Kleifeld et al.   NATURE BIOTECHNOLOGY

Plant Proteases: From Phenotypes to Molecular Mechanisms

(2008) Renier A. L. van der Hoorn   Annual Review of Plant Biology

Proteome-derived, database-searchable peptide libraries for identifying protease cleavage sites

(2008) Oliver Schilling et al.   NATURE BIOTECHNOLOGY