Linking transport and translation of mRNAs with endosomes and mitochondria

RNA transport and local translation in neurodevelopmental and neurodegenerative disease

(2021) Michael S. Fernandopulle et al.   NATURE NEUROSCIENCE

Common Principles and Specific Mechanisms of Mitophagy from Yeast to Humans

(2021) Rajesh Kumar et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Intracellular mRNA transport and localized translation

(2021) Sulagna Das et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Differential regulation of local mRNA dynamics and translation following long-term potentiation and depression

(2021) Paul G. Donlin-Asp et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Axonal precursor mi RNA s hitchhike on endosomes and locally regulate the development of neural circuits

(2020) Eloina Corradi et al.   EMBO JOURNAL

Lipid homeostasis in mitochondria

(2020) Yasushi Tamura et al.   BIOLOGICAL CHEMISTRY

CLUH granules coordinate translation of mitochondrial proteins with mTORC1 signaling and mitophagy

(2020) David Pla‐Martín et al.   EMBO JOURNAL

Zipcode RNA-binding Proteins and Membrane Trafficking Proteins Cooperate to Transport Glutelin mRNAs in Rice Endosperm

(2020) Li Tian et al.   PLANT CELL

Cytosolic Events in the Biogenesis of Mitochondrial Proteins

(2020) Yury S. Bykov et al.   TRENDS IN BIOCHEMICAL SCIENCES

Mechanisms and Regulation of RNA Condensation in RNP Granule Formation

(2020) Devin Tauber et al.   TRENDS IN BIOCHEMICAL SCIENCES

A reconstituted mammalian APC-kinesin complex selectively transports defined packages of axonal mRNAs

(2020) Sebastian Baumann et al.   Science Advances

Mitochondrial protein biogenesis in the synapse is supported by local translation

(2020) Bozena Kuzniewska et al.   EMBO REPORTS

Mitochondrial volume fraction and translation duration impact mitochondrial mRNA localization and protein synthesis

(2020) Tatsuhisa Tsuboi et al.   eLife

The STRIPAK signaling complex regulates dephosphorylation of GUL1, an RNA-binding protein that shuttles on endosomes

(2020) Valentina Stein et al.   PLoS Genetics

Walking the line: mechanisms underlying directional mRNA transport and localisation in neurons and beyond

(2020) Reem Abouward et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

In the Right Place at the Right Time: miRNAs as Key Regulators in Developing Axons

(2020) Eloina Corradi et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The functional organization of axonal mRNA transport and translation

(2020) Irene Dalla Costa et al.   NATURE REVIEWS NEUROSCIENCE

Late Endosomes Act as mRNA Translation Platforms and Sustain Mitochondria in Axons

(2019) Jean-Michel Cioni et al.   CELL

Spatially Stable Mitochondrial Compartments Fuel Local Translation during Plasticity

(2019) Vidhya Rangaraju et al.   CELL

Subcellular transcriptomes and proteomes of developing axon projections in the cerebral cortex

(2019) Alexandros Poulopoulos et al.   NATURE

Mitochondrial proteins: from biogenesis to functional networks

(2019) Nikolaus Pfanner et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

The Expanding and Unexpected Functions of Mitochondria Contact Sites

(2019) Laura L. Lackner   TRENDS IN CELL BIOLOGY

Transport of Proteins into Mitochondria

(2019) Katja G. Hansen et al.   PROTEIN JOURNAL

Co-translational assembly of proteasome subunits in NOT1-containing assemblysomes

(2019) Olesya O. Panasenko et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

STRIPAK, a highly conserved signaling complex, controls multiple eukaryotic cellular and developmental processes and is linked with human diseases

(2019) Ulrich Kück et al.   BIOLOGICAL CHEMISTRY

Transcriptional profiling and localization of GUL-1, a COT-1 pathway component, in Neurospora crassa

(2019) Inbal Herold et al.   FUNGAL GENETICS AND BIOLOGY

Core components of endosomal mRNA transport are evolutionarily conserved in fungi

(2019) Jessica Müller et al.   FUNGAL GENETICS AND BIOLOGY

Atlas of Subcellular RNA Localization Revealed by APEX-Seq

(2019) Furqan M. Fazal et al.   CELL

Local translation in neurons: visualization and function

(2019) Christine E. Holt et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The Transcriptome-wide Landscape and Modalities of EJC Binding in Adult Drosophila

(2019) Ales Obrdlik et al.   Cell Reports

RNA Granules Hitchhike on Lysosomes for Long-Distance Transport, Using Annexin A11 as a Molecular Tether

(2019) Ya-Cheng Liao et al.   CELL

The travels of mRNAs in neurons: do they know where they are going?

(2019) Sulagna Das et al.   CURRENT OPINION IN NEUROBIOLOGY

Proximity RNA Labeling by APEX-Seq Reveals the Organization of Translation Initiation Complexes and Repressive RNA Granules

(2019) Alejandro Padrón et al.   MOLECULAR CELL

mRNA localization in plant cells

(2019) Li Tian et al.   PLANT PHYSIOLOGY

The Benefits of Cotranslational Assembly: A Structural Perspective

(2019) Andre Schwarz et al.   TRENDS IN CELL BIOLOGY

Full-length transcriptome reconstruction reveals a large diversity of RNA and protein isoforms in rat hippocampus

(2019) Xi Wang et al.   Nature Communications

Characterization of Factors Involved in Localized Translation Near Mitochondria by Ribosome-Proximity Labeling

(2019) Dikla Vardi-Oknin et al.   Frontiers in Cell and Developmental Biology

A Solid-State Conceptualization of Information Transfer from Gene to Message to Protein

(2018) Masato Kato et al.   Annual Review of Biochemistry

Revisiting LAMP1 as a marker for degradative autophagy-lysosomal organelles in the nervous system

(2018) Xiu-Tang Cheng et al.   Autophagy

Alternative 3′ UTRs Modify the Localization, Regulatory Potential, Stability, and Plasticity of mRNAs in Neuronal Compartments

(2018) Georgi Tushev et al.   NEURON

Rapid Cue-Specific Remodeling of the Nascent Axonal Proteome

(2018) Roberta Cagnetta et al.   NEURON

Cytoplasmic Transport Machinery of the SPF27 Homologue Num1 in Ustilago maydis

(2018) Lu Zhou et al.   Scientific Reports

Recruitment of two dyneins to an mRNA-dependent Bicaudal D transport complex

(2018) Thomas E Sladewski et al.   eLife

RNA-directed activation of cytoplasmic dynein-1 in reconstituted transport RNPs

(2018) Mark A McClintock et al.   eLife

Ooplasmic flow cooperates with transport and anchorage inDrosophilaoocyte posterior determination

(2018) Wen Lu et al.   JOURNAL OF CELL BIOLOGY

Cotranslational assembly of protein complexes in eukaryotes revealed by ribosome profiling

(2018) Ayala Shiber et al.   NATURE

RNA-binding protein RBP-P is required for glutelin and prolamine mRNA localization in rice endosperm cells

(2018) Li Tian et al.   PLANT CELL

An ER surface retrieval pathway safeguards the import of mitochondrial membrane proteins in yeast

(2018) Katja G. Hansen et al.   SCIENCE

Mechanisms of Cotranslational Maturation of Newly Synthesized Proteins

(2018) Günter Kramer et al.   Annual Review of Biochemistry

The key protein of endosomal mRNP transport Rrm4 binds translational landmark sites of cargo mRNAs

(2018) Lilli Olgeiser et al.   EMBO REPORTS

Membrane-Associated RNA-Binding Proteins Orchestrate Organelle-Coupled Translation

(2018) Julien Béthune et al.   TRENDS IN CELL BIOLOGY

A STRIPAK complex mediates axonal transport of autophagosomes and dense core vesicles through PP2A regulation

(2017) Amanda L. Neisch et al.   JOURNAL OF CELL BIOLOGY

Ustilago maydis effectors and their impact on virulence

(2017) Daniel Lanver et al.   NATURE REVIEWS MICROBIOLOGY

Molecular architecture and dynamics of ASH1 mRNA recognition by its mRNA-transport complex

(2017) Franziska Theresia Edelmann et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Hitchhiking: A Non-Canonical Mode of Microtubule-Based Transport

(2017) John Salogiannis et al.   TRENDS IN CELL BIOLOGY

RNA localization is a key determinant of neurite-enriched proteome

(2017) Alessandra Zappulo et al.   Nature Communications

Molecular architecture and dynamics of ASH1 mRNA recognition by its mRNA-transport complex

(2017) Franziska Theresia Edelmann et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The ESCRT regulator Did2 maintains the balance between long-distance endosomal transport and endocytic trafficking

(2017) Carl Haag et al.   PLoS Genetics

mRNA transport in fungal top models

(2017) Dierk Niessing et al.   Wiley Interdisciplinary Reviews-RNA

VDAC2-specific cellular functions and the underlying structure

(2016) Shamim Naghdi et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Real-Time Imaging of Translation on Single mRNA Transcripts in Live Cells

(2016) Chong Wang et al.   CELL

Dynamics of Translation of Single mRNA Molecules In Vivo

(2016) Xiaowei Yan et al.   CELL

Dynamic Axonal Translation in Developing and Mature Visual Circuits

(2016) Toshiaki Shigeoka et al.   CELL

The RNA-binding protein SFPQ orchestrates an RNA regulon to promote axon viability

(2016) Katharina E Cosker et al.   NATURE NEUROSCIENCE

Glutamate-induced RNA localization and translation in neurons

(2016) Young J. Yoon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Translation dynamics of single mRNAs in live cells and neurons

(2016) B. Wu et al.   SCIENCE

Principles and Properties of Stress Granules

(2016) David S.W. Protter et al.   TRENDS IN CELL BIOLOGY

An Essential Role for COPI in mRNA Localization to Mitochondria and Mitochondrial Function

(2016) Dmitry Zabezhinsky et al.   Cell Reports

Membrane-Coupled mRNA Trafficking in Fungi

(2015) Carl Haag et al.   Annual Review of Microbiology

PINK1 and Parkin Control Localized Translation of Respiratory Chain Component mRNAs on Mitochondria Outer Membrane

(2015) Stephan Gehrke et al.   Cell Metabolism

Peroxisomes, lipid droplets, and endoplasmic reticulum “hitchhike” on motile early endosomes

(2015) Sofia C. Guimaraes et al.   JOURNAL OF CELL BIOLOGY

Differential requirement of F-actin and microtubule cytoskeleton in cue-induced local protein synthesis in axonal growth cones

(2015) Michael Piper et al.   Neural Development

The structure of the SOLE element of oskar mRNA

(2015) B. Simon et al.   RNA

Operon structure and cotranslational subunit association direct protein assembly in bacteria

(2015) Y.-W. Shieh et al.   SCIENCE

A FYVE zinc finger domain protein specifically links mRNA transport to endosome trafficking

(2015) Thomas Pohlmann et al.   eLife

The “tale” of poly(A) binding protein: The MLLE domain and PAM2-containing proteins

(2014) Jingwei Xie et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

APC Is an RNA-Binding Protein, and Its Interactome Provides a Link to Neural Development and Microtubule Assembly

(2014) Nicolas Preitner et al.   CELL

A Protein-Tagging System for Signal Amplification in Gene Expression and Fluorescence Imaging

(2014) Marvin E. Tanenbaum et al.   CELL

Endocytosis and early endosome motility in filamentous fungi

(2014) Gero Steinberg   CURRENT OPINION IN MICROBIOLOGY

Early endosome motility spatially organizes polysome distribution

(2014) Yujiro Higuchi et al.   JOURNAL OF CELL BIOLOGY

Hook is an adapter that coordinates kinesin-3 and dynein cargo attachment on early endosomes

(2014) Ewa Bielska et al.   JOURNAL OF CELL BIOLOGY

In the right place at the right time: visualizing and understanding mRNA localization

(2014) Adina R. Buxbaum et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Targeting and plasticity of mitochondrial proteins revealed by proximity-specific ribosome profiling

(2014) C. C. Williams et al.   SCIENCE

Principles of ER cotranslational translocation revealed by proximity-specific ribosome profiling

(2014) C. H. Jan et al.   SCIENCE

Post-transcriptional RNA regulons affecting cell cycle and proliferation

(2014) Jeff G. Blackinton et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Long-distance endosome trafficking drives fungal effector production during plant infection

(2014) Ewa Bielska et al.   Nature Communications

OM14 is a mitochondrial receptor for cytosolic ribosomes that supports co-translational import into mitochondria

(2014) Chen Lesnik et al.   Nature Communications

The SPF27 Homologue Num1 Connects Splicing and Kinesin 1-Dependent Cytoplasmic Trafficking in Ustilago maydis

(2014) Nikola Kellner et al.   PLoS Genetics

Signal Recognition Particle: An Essential Protein-Targeting Machine

(2013) David Akopian et al.   Annual Review of Biochemistry

Endosomal transport of septin mRNA and protein indicates local translation on endosomes and is required for correct septin filamentation

(2013) Sebastian Baumann et al.   EMBO REPORTS

In vitro reconstitution of an mRNA-transport complex reveals mechanisms of assembly and motor activation

(2013) Roland G. Heym et al.   JOURNAL OF CELL BIOLOGY

Single-molecule reconstitution of mRNA transport by a class V myosin

(2013) Thomas E Sladewski et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Role of Loc1p in assembly and reorganization of nuclear ASH1 messenger ribonucleoprotein particles in yeast

(2013) A. Niedner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mitochondria Coordinate Sites of Axon Branching through Localized Intra-axonal Protein Synthesis

(2013) Mirela Spillane et al.   Cell Reports

Local Translation of Extranuclear Lamin B Promotes Axon Maintenance

(2012) Byung C. Yoon et al.   CELL

The transport machinery for motility of fungal endosomes

(2012) Gero Steinberg   FUNGAL GENETICS AND BIOLOGY

Control of RNP motility and localization by a splicing-dependent structure in oskar mRNA

(2012) Sanjay Ghosh et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The Local Transcriptome in the Synaptic Neuropil Revealed by Deep Sequencing and High-Resolution Imaging

(2012) Iván J. Cajigas et al.   NEURON

Controlled and stochastic retention concentrates dynein at microtubule ends to keep endosomes on track

(2011) Martin Schuster et al.   EMBO JOURNAL

Mechanisms of dendritic mRNA transport and its role in synaptic tagging

(2011) Michael Doyle et al.   EMBO JOURNAL

Endosome maturation

(2011) Jatta Huotari et al.   EMBO JOURNAL

The RNA-Binding Protein Rrm4 is Essential for Efficient Secretion of Endochitinase Cts1

(2011) Janine Koepke et al.   MOLECULAR & CELLULAR PROTEOMICS

Kinesin-3 and dynein cooperate in long-range retrograde endosome motility along a nonuniform microtubule array

(2011) Martin Schuster et al.   MOLECULAR BIOLOGY OF THE CELL

RNA targeting to a specific ER sub-domain is required for efficient transport and packaging of α-globulins to the protein storage vacuole in developing rice endosperm

(2011) Haruhiko Washida et al.   PLANT JOURNAL

Localization of mRNAs coding for mitochondrial proteins in the yeast Saccharomyces cerevisiae

(2011) N. Gadir et al.   RNA

Real-Time Observation of Transcription Initiation and Elongation on an Endogenous Yeast Gene

(2011) D. R. Larson et al.   SCIENCE

Expression of XNOA 36 in the mitochondrial cloud of Xenopus laevis oocytes

(2011) M.C. Vaccaro et al.   ZYGOTE

Posttranscriptional control of growth and development in Ustilago maydis

(2010) Evelyn Vollmeister et al.   CURRENT OPINION IN MICROBIOLOGY

Molecular Architecture of the Human Prp19/CDC5L Complex

(2010) M. Grote et al.   MOLECULAR AND CELLULAR BIOLOGY

NOA36/ZNF330 is a conserved cystein-rich protein with proapoptotic activity in human cells

(2009) Ivan S. de Melo et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

mRNA Localization: Gene Expression in the Spatial Dimension

(2009) Kelsey C. Martin et al.   CELL

The fungal RNA-binding protein Rrm4 mediates long-distance transport of ubi1 and rho3 mRNAs

(2009) Julian König et al.   EMBO JOURNAL

Intracellular Transport of Human Immunodeficiency Virus Type 1 Genomic RNA and Viral Production Are Dependent on Dynein Motor Function and Late Endosome Positioning

(2009) Martin Lehmann et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Identification ofcis-localization elements of the maize 10-kDa δ-zein and their use in targeting RNAs to specific cortical endoplasmic reticulum subdomains

(2009) Haruhiko Washida et al.   PLANT JOURNAL

Subcellular mRNA Localization in Animal Cells and Why It Matters

(2009) C. E. Holt et al.   SCIENCE

Germline P Granules Are Liquid Droplets That Localize by Controlled Dissolution/Condensation

(2009) C. P. Brangwynne et al.   SCIENCE

Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling

(2009) N. T. Ingolia et al.   SCIENCE

An RNA Transport System in Candida albicans Regulates Hyphal Morphology and Invasive Growth

(2009) Sarah L. Elson et al.   PLoS Genetics

In Vivo Imaging of oskar mRNA Transport Reveals the Mechanism of Posterior Localization

(2008) Vitaly L. Zimyanin et al.   CELL