Fieldable Environmental DNA Sequencing to Assess Jellyfish Biodiversity in Nearshore Waters of the Florida Keys, United States
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Title
Fieldable Environmental DNA Sequencing to Assess Jellyfish Biodiversity in Nearshore Waters of the Florida Keys, United States
Authors
Keywords
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Journal
Frontiers in Marine Science
Volume 8, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2021-04-14
DOI
10.3389/fmars.2021.640527
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- (2019) Natalie A. Sawaya et al. Ecology and Evolution
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- (2019) Hedin T Nelson‐Chorney et al. FRONTIERS IN ECOLOGY AND THE ENVIRONMENT
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- (2019) Evan Bolyen et al. NATURE BIOTECHNOLOGY
- Box, stalked, and upside-down? Draft genomes from diverse jellyfish (Cnidaria, Acraspeda) lineages: Alatina alata (Cubozoa), Calvadosia cruxmelitensis (Staurozoa), and Cassiopea xamachana (Scyphozoa)
- (2019) Aki Ohdera et al. GigaScience
- GenBank is a reliable resource for 21st century biodiversity research
- (2019) Matthieu Leray et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2019) Luke E. Holman et al. Scientific Reports
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- (2018) María A Mendoza-Becerril et al. BULLETIN OF MARINE SCIENCE
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- (2018) Kim M. Parsons et al. Royal Society Open Science
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- (2017) Amanda F. Cunha et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Retrospective study of jellyfish envenomation in emergency wards in Guadeloupe between 2010 and 2016: When to diagnose Irukandji syndrome?
- (2017) Djoudi Bouyer-Monot et al. TOXICON
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- (2017) Ryuji J. Machida et al. Scientific Data
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- (2017) Rheyda Hinlo et al. PLoS One
- Box Jellyfish Alatina alata Has a Circumtropical Distribution
- (2016) Jonathan W. Lawley et al. BIOLOGICAL BULLETIN
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- (2016) Cheryl Lewis Ames et al. BMC GENOMICS
- Metabarcoding of marine zooplankton: prospects, progress and pitfalls
- (2016) Ann Bucklin et al. JOURNAL OF PLANKTON RESEARCH
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- (2016) Robert M. Lasley et al. PROCEEDINGS OF THE BIOLOGICAL SOCIETY OF WASHINGTON
- Critical considerations for the application of environmental DNA methods to detect aquatic species
- (2016) Caren S. Goldberg et al. Methods in Ecology and Evolution
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- Redesign of PCR primers for mitochondrial cytochromecoxidase subunit I for marine invertebrates and application in all-taxa biotic surveys
- (2013) J. Geller et al. Molecular Ecology Resources
- Recurrent jellyfish blooms are a consequence of global oscillations
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- (2013) DALE R. CALDER ZOOTAXA
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