Water, water everywhere: environmental DNA can unlock population structure in elusive marine species

Seawater environmental DNA reflects seasonality of a coastal fish community

(2017) Eva Egelyng Sigsgaard et al.   MARINE BIOLOGY

Spatial distribution of environmental DNA in a nearshore marine habitat

(2017) James L. O’Donnell et al.   PeerJ

Marine ecology: Genetics from a drop in the ocean

(2017) Simon Creer et al.   Nature Ecology & Evolution

Understanding environmental DNA detection probabilities: A case study using a stream-dwelling char Salvelinus fontinalis

(2016) Taylor M. Wilcox et al.   BIOLOGICAL CONSERVATION

Quantification of Environmental DNA (eDNA) Shedding and Decay Rates for Three Marine Fish

(2016) Lauren M. Sassoubre et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Monitoring population-level responses of marine mammals to human activities

(2016) Erica Fleishman et al.   MARINE MAMMAL SCIENCE

Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding

(2016) Alice Valentini et al.   MOLECULAR ECOLOGY

stratag: Anrpackage for manipulating, summarizing and analysing population genetic data

(2016) Frederick I. Archer et al.   Molecular Ecology Resources

W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis

(2016) Jana Trifinopoulos et al.   NUCLEIC ACIDS RESEARCH

Marine mammals harbor unique microbiotas shaped by and yet distinct from the sea

(2016) Elisabeth M. Bik et al.   Nature Communications

Characterization, optimization, and validation of environmental DNA (eDNA) markers to detect an endangered aquatic mammal

(2016) Hongjuan Ma et al.   Conservation Genetics Resources

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Population characteristics of a large whale shark aggregation inferred from seawater environmental DNA

(2016) Eva Egelyng Sigsgaard et al.   Nature Ecology & Evolution

Environmental DNA from Seawater Samples Correlate with Trawl Catches of Subarctic, Deepwater Fishes

(2016) Philip Francis Thomsen et al.   PLoS One

Quantification of eDNA shedding rates from invasive bighead carp Hypophthalmichthys nobilis and silver carp Hypophthalmichthys molitrix

(2015) Katy E. Klymus et al.   BIOLOGICAL CONSERVATION

Quantifying effects of UV-B, temperature, and pH on eDNA degradation in aquatic microcosms

(2015) Katherine M. Strickler et al.   BIOLOGICAL CONSERVATION

Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity

(2015) Philip Francis Thomsen et al.   BIOLOGICAL CONSERVATION

Temporal changes in abundance of harbor porpoise (Phocoena phocoena) inhabiting the inland waters of Southeast Alaska

(2015) Marilyn E. Dahlheim et al.   FISHERY BULLETIN

DNA barcoding and metabarcoding of standardized samples reveal patterns of marine benthic diversity

(2015) Matthieu Leray et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Environmental Conditions Influence eDNA Persistence in Aquatic Systems

(2014) Matthew A. Barnes et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

The room temperature preservation of filtered environmental DNA samples and assimilation into a phenol-chloroform-isoamyl alcohol DNA extraction

(2014) Mark A. Renshaw et al.   Molecular Ecology Resources

Population structure and intergeneric hybridization in harbour porpoises Phocoena phocoena in British Columbia, Canada

(2014) CA Crossman et al.   Endangered Species Research

Estimating occupancy and abundance of stream amphibians using environmental DNA from filtered water samples

(2013) David S. Pilliod et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Ultrafast Approximation for Phylogenetic Bootstrap

(2013) B. Q. Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Factors influencing detection of eDNA from a stream-dwelling amphibian

(2013) David S. Pilliod et al.   Molecular Ecology Resources

Using Environmental DNA to Estimate the Distribution of an Invasive Fish Species in Ponds

(2013) Teruhiko Takahara et al.   PLoS One

Robust Detection of Rare Species Using Environmental DNA: The Importance of Primer Specificity

(2013) Taylor M. Wilcox et al.   PLoS One

Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction

(2012) Jian Ye et al.   BMC BIOINFORMATICS

Estimation of Fish Biomass Using Environmental DNA

(2012) Teruhiko Takahara et al.   PLoS One

Investigating the Potential Use of Environmental DNA (eDNA) for Genetic Monitoring of Marine Mammals

(2012) Andrew D. Foote et al.   PLoS One

Molecular profiling of marine fauna: Integration of omics with environmental assessment of the world's oceans

(2011) Nik Veldhoen et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Molecular Detection of Vertebrates in Stream Water: A Demonstration Using Rocky Mountain Tailed Frogs and Idaho Giant Salamanders

(2011) Caren S. Goldberg et al.   PLoS One

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Modulation of eDNA Release and Degradation Affects Staphylococcus aureus Biofilm Maturation

(2009) Ethan E. Mann et al.   PLoS One

Persistence of nucleic acid markers of health-relevant organisms in seawater microcosms: Implications for their use in assessing risk in recreational waters

(2009) Sarah P. Walters et al.   WATER RESEARCH

Species detection using environmental DNA from water samples

(2008) G. F. Ficetola et al.   Biology Letters

Cetaceans of Southeast Alaska: distribution and seasonal occurrence

(2008) Marilyn E. Dahlheim et al.   JOURNAL OF BIOGEOGRAPHY