Box, stalked, and upside-down? Draft genomes from diverse jellyfish (Cnidaria, Acraspeda) lineages: Alatina alata (Cubozoa), Calvadosia cruxmelitensis (Staurozoa), and Cassiopea xamachana (Scyphozoa)

The genome of the jellyfish Clytia hemisphaerica and the evolution of the cnidarian life-cycle

(2019) Lucas Leclère et al.   Nature Ecology & Evolution

The genome of the giant Nomura’s jellyfish sheds light on the early evolution of active predation

(2019) Hak-Min Kim et al.   BMC BIOLOGY

A hybrid de novo assembly of the sea pansy (Renilla muelleri) genome

(2019) Justin B Jiang et al.   GigaScience

Medusozoan genomes inform the evolution of the jellyfish body plan

(2019) Konstantin Khalturin et al.   Nature Ecology & Evolution

Box, stalked, and upside-down? Draft genomes from diverse jellyfish (Cnidaria, Acraspeda) lineages: Alatina alata (Cubozoa), Calvadosia cruxmelitensis (Staurozoa), and Cassiopea xamachana (Scyphozoa)

(2019) Aki Ohdera et al.   GigaScience

Evolution and development of scyphozoan jellyfish

(2018) Rebecca R. Helm   BIOLOGICAL REVIEWS

Phylogenomics provides a robust topology of the major cnidarian lineages and insights on the origins of key organismal traits

(2018) Ehsan Kayal et al.   BMC EVOLUTIONARY BIOLOGY

Gonadal histology of box jellyfish (Cnidaria: Cubozoa) reveals variation between internal fertilizing species Alatina alata (Alatinidae) and Copula sivickisi (Tripedaliidae)

(2018) Jimena García-Rodríguez et al.   JOURNAL OF MORPHOLOGY

The joint evolution of the Myxozoa and their alternate hosts: A cnidarian recipe for success and vast biodiversity

(2018) Astrid S. Holzer et al.   MOLECULAR ECOLOGY

Loss of metagenesis and evolution of a parasitic life style in a group of open-ocean jellyfish

(2018) Bastian Bentlage et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The role of retinoic acid signaling in starfish metamorphosis

(2018) Shumpei Yamakawa et al.   EvoDevo

Improving draft genome contiguity with reference-derived in silico mate-pair libraries

(2018) José Horacio Grau et al.   GigaScience

Comparative analysis of the Pocillopora damicornis genome highlights role of immune system in coral evolution

(2018) R. Cunning et al.   Scientific Reports

Venomix: a simple bioinformatic pipeline for identifying and characterizing toxin gene candidates from transcriptomic data

(2018) Jason Macrander et al.   PeerJ

Transcriptome analysis of scyphozoan jellyfish Rhopilema esculentum from polyp to medusa identifies potential genes regulating strobilation

(2018) Jianlong Ge et al.   DEVELOPMENT GENES AND EVOLUTION

The genome of the jellyfish Aurelia and the evolution of animal complexity

(2018) David A. Gold et al.   Nature Ecology & Evolution

Comparative analysis of the genomes of Stylophora pistillata and Acropora digitifera provides evidence for extensive differences between species of corals

(2017) Christian R. Voolstra et al.   Scientific Reports

A review of the global diversity and natural history of stalked jellyfishes (Cnidaria, Staurozoa)

(2017) Lucília S. Miranda et al.   Marine Biodiversity

Scallop genome provides insights into evolution of bilaterian karyotype and development

(2017) Shi Wang et al.   Nature Ecology & Evolution

Box Jellyfish Alatina alata Has a Circumtropical Distribution

(2016) Jonathan W. Lawley et al.   BIOLOGICAL BULLETIN

A new transcriptome and transcriptome profiling of adult and larval tissue in the box jellyfish Alatina alata: an emerging model for studying venom, vision and sex

(2016) Cheryl Lewis Ames et al.   BMC GENOMICS

Systematics of stalked jellyfishes (Cnidaria: Staurozoa)

(2016) Lucília S. Miranda et al.   PeerJ

Comparative internal anatomy of Staurozoa (Cnidaria), with functional and evolutionary inferences

(2016) Lucília S. Miranda et al.   PeerJ

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Transcriptome profiling of the dynamic life cycle of the scypohozoan jellyfish Aurelia aurita

(2015) Vera Brekhman et al.   BMC GENOMICS

Monodisc strobilation in Japanese giant box jellyfishMorbakka virulenta(Kishinouye, 1910): a strong implication of phylogenetic similarity between Cubozoa and Scyphozoa

(2015) Sho Toshino et al.   EVOLUTION & DEVELOPMENT

Evolution of Hox-like genes in Cnidaria: Study of Hydra Hox repertoire reveals tailor-made Hox-code for Cnidarians

(2015) Puli Chandramouli Reddy et al.   MECHANISMS OF DEVELOPMENT

Evolution of an Ancient Venom: Recognition of a Novel Family of Cnidarian Toxins and the Common Evolutionary Origin of Sodium and Potassium Neurotoxins in Sea Anemone

(2015) Mahdokht Jouiaei et al.   MOLECULAR BIOLOGY AND EVOLUTION

The octopus genome and the evolution of cephalopod neural and morphological novelties

(2015) Caroline B. Albertin et al.   NATURE

Genomic insights into the evolutionary origin of Myxozoa within Cnidaria

(2015) E. Sally Chang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cubozoan genome illuminates functional diversification of opsins and photoreceptor evolution

(2015) Michaela Liegertová et al.   Scientific Reports

Adoption of conserved developmental genes in development and origin of the medusa body plan

(2015) Johanna E. M. Kraus et al.   EvoDevo

Ancient Venom Systems: A Review on Cnidaria Toxins

(2015) Mahdokht Jouiaei et al.   Toxins

Phylogenetic analysis of higher-level relationships within Hydroidolina (Cnidaria: Hydrozoa) using mitochondrial genome data and insight into their mitochondrial transcription

(2015) Ehsan Kayal et al.   PeerJ

Phylogenomic Analyses Support Traditional Relationships within Cnidaria

(2015) Felipe Zapata et al.   PLoS One

Sticholysin I–membrane interaction: An interplay between the presence of sphingomyelin and membrane fluidity

(2014) Lohans Pedrera et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Regulation of Polyp-to-Jellyfish Transition in Aurelia aurita

(2014) Björn Fuchs et al.   CURRENT BIOLOGY

Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads

(2014) Rei Kajitani et al.   GENOME RESEARCH

The First Myriapod Genome Sequence Reveals Conservative Arthropod Gene Content and Genome Organisation in the Centipede Strigamia maritima

(2014) Ariel D. Chipman et al.   PLOS BIOLOGY

A genomic approach to coral-dinoflagellate symbiosis: studies of Acropora digitifera and Symbiodinium minutum

(2014) Chuya Shinzato et al.   Frontiers in Microbiology

The MaSuRCA genome assembler

(2013) Aleksey V. Zimin et al.   BIOINFORMATICS

Is it possible to determine the economic impact of jellyfish outbreaks on fisheries? A Case Study – Slovenia

(2013) B. NASTAV et al.   MEDITERRANEAN MARINE SCIENCE

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Insights into bilaterian evolution from three spiralian genomes

(2012) Oleg Simakov et al.   NATURE

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Development of a rational nomenclature for naming peptide and protein toxins from sea anemones

(2012) Joacir Stolarz Oliveira et al.   TOXICON

Morphology, distribution, and evolution of apical structure of nematocysts in hexacorallia

(2011) Abigail J. Reft et al.   JOURNAL OF MORPHOLOGY

Using the Acropora digitifera genome to understand coral responses to environmental change

(2011) Chuya Shinzato et al.   NATURE

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

DNA Barcoding the Medusozoa using mtCOI

(2010) Brian D. Ortman et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Character Evolution in Hydrozoa (phylum Cnidaria)

(2010) Paulyn Cartwright et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

On the origin and evolution of the lower Metazoa

(2010) Luitfried V. Salvini-Plawen   JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH

The dynamic genome of Hydra

(2010) Jarrod A. Chapman et al.   NATURE

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

(2010) S. Gnerre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A novel minicollagen gene links cnidarians and myxozoans

(2010) J. W. Holland et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH

Are Hox Genes Ancestrally Involved in Axial Patterning? Evidence from the Hydrozoan Clytia hemisphaerica (Cnidaria)

(2009) Roxane Chiori et al.   PLoS One

Biochemical and molecular characterisation of cubozoan protein toxins

(2009) Diane L. Brinkman et al.   TOXICON