Fieldable Environmental DNA Sequencing to Assess Jellyfish Biodiversity in Nearshore Waters of the Florida Keys, United States

Polyps of the jellyfish Aurelia aurita are unaffected by chronic exposure to a combination of pesticides

(2020) Carolina Olguin‐Jacobson et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Environmental DNA can act as a biodiversity barometer of anthropogenic pressures in coastal ecosystems

(2020) Joseph D. DiBattista et al.   Scientific Reports

Portable sequencing as a teaching tool in conservation and biodiversity research

(2020) Mrinalini Watsa et al.   PLOS BIOLOGY

Adaptation to Bleaching: Are Thermotolerant Symbiodiniaceae Strains More Successful Than Other Strains Under Elevated Temperatures in a Model Symbiotic Cnidarian?

(2020) Casandra R. Newkirk et al.   Frontiers in Microbiology

MinION-in-ARMS: Nanopore Sequencing to Expedite Barcoding of Specimen-Rich Macrofaunal Samples From Autonomous Reef Monitoring Structures

(2020) Jia Jin Marc Chang et al.   Frontiers in Marine Science

Takeaways from Mobile DNA Barcoding with BentoLab and MinION

(2020) Jia Jin Marc Chang et al.   Genes

The puzzling occurrence of the upside-down jellyfish Cassiopea (Cnidaria: Scyphozoa) along the Brazilian coast: a result of several invasion events?

(2020) Sergio N. Stampar et al.   Zoologia

Assessing eukaryotic biodiversity in the Florida Keys National Marine Sanctuary through environmental DNA metabarcoding

(2019) Natalie A. Sawaya et al.   Ecology and Evolution

Marine environmental DNA biomonitoring reveals seasonal patterns in biodiversity and identifies ecosystem responses to anomalous climatic events

(2019) Tina E. Berry et al.   PLoS Genetics

Environmental DNA in lake sediment reveals biogeography of native genetic diversity

(2019) Hedin T Nelson‐Chorney et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Box, stalked, and upside-down? Draft genomes from diverse jellyfish (Cnidaria, Acraspeda) lineages: Alatina alata (Cubozoa), Calvadosia cruxmelitensis (Staurozoa), and Cassiopea xamachana (Scyphozoa)

(2019) Aki Ohdera et al.   GigaScience

GenBank is a reliable resource for 21st century biodiversity research

(2019) Matthieu Leray et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Detection of introduced and resident marine species using environmental DNA metabarcoding of sediment and water

(2019) Luke E. Holman et al.   Scientific Reports

Genetic Biomonitoring and Biodiversity Assessment Using Portable Sequencing Technologies: Current Uses and Future Directions

(2019) Krehenwinkel et al.   Genes

Spatio-temporal distribution of environmental DNA derived from Japanese sea nettle jellyfish Chrysaora pacifica in Omura Bay, Kyushu, Japan

(2019) Hiroyuki Takasu et al.   Plankton & Benthos Research

NanoPack: visualizing and processing long-read sequencing data

(2018) Wouter De Coster et al.   BIOINFORMATICS

Benthic hydroids (Cnidaria, Hydrozoa) from Alacranes Reef, Gulf of Mexico, Mexico

(2018) María A Mendoza-Becerril et al.   BULLETIN OF MARINE SCIENCE

First record of the stalked jellyfish Haliclystus tenuis Kishinouye, 1910 (Cnidaria: Staurozoa) in Atlantic waters

(2018) Sabine Holst et al.   Marine Biodiversity

Real-time DNA barcoding in a rainforest using nanopore sequencing: opportunities for rapid biodiversity assessments and local capacity building

(2018) Aaron Pomerantz et al.   GigaScience

Water, water everywhere: environmental DNA can unlock population structure in elusive marine species

(2018) Kim M. Parsons et al.   Royal Society Open Science

Phylogenetic relationships of Proboscoida Broch, 1910 (Cnidaria, Hydrozoa): Are traditional morphological diagnostic characters relevant for the delimitation of lineages at the species, genus, and family levels?

(2017) Amanda F. Cunha et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Retrospective study of jellyfish envenomation in emergency wards in Guadeloupe between 2010 and 2016: When to diagnose Irukandji syndrome?

(2017) Djoudi Bouyer-Monot et al.   TOXICON

A review of the global diversity and natural history of stalked jellyfishes (Cnidaria, Staurozoa)

(2017) Lucília S. Miranda et al.   Marine Biodiversity

Metazoan mitochondrial gene sequence reference datasets for taxonomic assignment of environmental samples

(2017) Ryuji J. Machida et al.   Scientific Data

Methods to maximise recovery of environmental DNA from water samples

(2017) Rheyda Hinlo et al.   PLoS One

Box Jellyfish Alatina alata Has a Circumtropical Distribution

(2016) Jonathan W. Lawley et al.   BIOLOGICAL BULLETIN

A new transcriptome and transcriptome profiling of adult and larval tissue in the box jellyfish Alatina alata: an emerging model for studying venom, vision and sex

(2016) Cheryl Lewis Ames et al.   BMC GENOMICS

Metabarcoding of marine zooplankton: prospects, progress and pitfalls

(2016) Ann Bucklin et al.   JOURNAL OF PLANKTON RESEARCH

First record of the box jellyfishTripedalia cystophora(Cnidaria: Cubozoa: Tripedaliidae) in the Gulf of Mexico

(2016) Robert M. Lasley et al.   PROCEEDINGS OF THE BIOLOGICAL SOCIETY OF WASHINGTON

Critical considerations for the application of environmental DNA methods to detect aquatic species

(2016) Caren S. Goldberg et al.   Methods in Ecology and Evolution

Environmental DNA as a ‘Snapshot’ of Fish Distribution: A Case Study of Japanese Jack Mackerel in Maizuru Bay, Sea of Japan

(2016) Satoshi Yamamoto et al.   PLoS One

Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity

(2015) Philip Francis Thomsen et al.   BIOLOGICAL CONSERVATION

Techniques for the practical collection of environmental DNA: filter selection, preservation, and extraction

(2015) Toshifumi Minamoto et al.   LIMNOLOGY

Assessing vertebrate biodiversity in a kelp forest ecosystem using environmental DNA

(2015) Jesse A. Port et al.   MOLECULAR ECOLOGY

Phylogenomic Analyses Support Traditional Relationships within Cnidaria

(2015) Felipe Zapata et al.   PLoS One

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Redesign of PCR primers for mitochondrial cytochromecoxidase subunit I for marine invertebrates and application in all-taxa biotic surveys

(2013) J. Geller et al.   Molecular Ecology Resources

Recurrent jellyfish blooms are a consequence of global oscillations

(2013) R. H. Condon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Some shallow-water hydroids (Cnidaria: Hydrozoa) from the central east coast of Florida, USA

(2013) DALE R. CALDER   ZOOTAXA

Redescription of Alatina alata (Reynaud, 1830) (Cnidaria: Cubozoa) from Bonaire, Dutch Caribbean

(2013) CHERYL LEWIS et al.   ZOOTAXA

Ultra-deep sequencing enables high-fidelity recovery of biodiversity for bulk arthropod samples without PCR amplification

(2013) Xin Zhou et al.   GigaScience

Detection of a Diverse Marine Fish Fauna Using Environmental DNA from Seawater Samples

(2012) Philip Francis Thomsen et al.   PLoS One

Interactive metagenomic visualization in a Web browser

(2011) Brian D Ondov et al.   BMC BIOINFORMATICS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One