eDNA metabarcoding of small plankton samples to detect fish larvae and their preys from Atlantic and Pacific waters

Advances in metabarcoding techniques bring us closer to reliable monitoring of the marine benthos

(2020) Margaux Steyaert et al.   JOURNAL OF APPLIED ECOLOGY

Biases in bulk: DNA metabarcoding of marine communities and the methodology involved

(2020) Luna M. van der Loos et al.   MOLECULAR ECOLOGY

Environmental DNA from plastic and textile marine litter detects exotic and nuisance species nearby ports

(2020) Aitor Ibabe et al.   PLoS One

Nuisance Algae in Ballast Water Facing International Conventions. Insights from DNA Metabarcoding in Ships Arriving in Bay of Biscay

(2020) Alba Ardura et al.   Water

Artificial habitats host elevated densities of large reef-associated predators

(2020) Avery B. Paxton et al.   PLoS One

Stress resistance for unraveling potential biopollutants. Insights from ballast water community analysis through DNA

(2020) Alba Ardura et al.   MARINE POLLUTION BULLETIN

Past, present, and future perspectives of environmental DNA (eDNA) metabarcoding: A systematic review in methods, monitoring, and applications of global eDNA

(2019) Krista M. Ruppert et al.   Global Ecology and Conservation

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Using DNA barcoding to improve invasive pest identification at U.S. ports-of-entry

(2019) Mary J. L. Madden et al.   PLoS One

DNA barcode reference libraries for the monitoring of aquatic biota in Europe: Gap-analysis and recommendations for future work

(2019) Hannah Weigand et al.   SCIENCE OF THE TOTAL ENVIRONMENT

GenBank is a reliable resource for 21st century biodiversity research

(2019) Matthieu Leray et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metabarcoding and post-sampling strategies to discover non-indigenous species: A case study in the estuaries of the central south Bay of Biscay

(2018) Yaisel J. Borrell et al.   JOURNAL FOR NATURE CONSERVATION

Metabarcoding of marine environmental DNA based on mitochondrial and nuclear genes

(2018) Babett Günther et al.   Scientific Reports

Combining morpho-taxonomy and metabarcoding enhances the detection of non-indigenous marine pests in biofouling communities

(2018) Ulla von Ammon et al.   Scientific Reports

Species-specific markers for early detection of marine invertebrate invaders through eDNA methods: Gaps and priorities in GenBank as database example

(2018) Alba Ardura   JOURNAL FOR NATURE CONSERVATION

18S V9 metabarcoding correctly depicts plankton estuarine community drivers

(2017) D Abad et al.   MARINE ECOLOGY PROGRESS SERIES

18S V9 metabarcoding correctly depicts plankton estuarine community drivers

(2017) D Abad et al.   MARINE ECOLOGY PROGRESS SERIES

DNA in a bottle—Rapid metabarcoding survey for early alerts of invasive species in ports

(2017) Yaisel J. Borrell et al.   PLoS One

Metabarcoding of marine zooplankton: prospects, progress and pitfalls

(2016) Ann Bucklin et al.   JOURNAL OF PLANKTON RESEARCH

Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding

(2016) Alice Valentini et al.   MOLECULAR ECOLOGY

18S rRNA V9 metabarcoding for diet characterization: a critical evaluation with two sympatric zooplanktivorous fish species

(2016) Aitor Albaina et al.   Ecology and Evolution

Diversity of planktonic fish larvae along a latitudinal gradient in the Eastern Atlantic Ocean estimated through DNA barcodes

(2016) Alba Ardura et al.   PeerJ

The Tara Oceans voyage reveals global diversity and distribution patterns of marine planktonic ciliates

(2016) Anna Gimmler et al.   Scientific Reports

Environmental DNA evidence of transfer of North Sea molluscs across tropical waters through ballast water

(2015) Alba Ardura et al.   JOURNAL OF MOLLUSCAN STUDIES

Detecting nuisance species using NGST: Methodology shortcomings and possible application in ballast water monitoring

(2015) Anastasija Zaiko et al.   MARINE ENVIRONMENTAL RESEARCH

Metabarcoding approach for the ballast water surveillance – An advantageous solution or an awkward challenge?

(2015) Anastasija Zaiko et al.   MARINE POLLUTION BULLETIN

Metabarcoding approach for nonindigenous species surveillance in marine coastal waters

(2015) Anastasija Zaiko et al.   MARINE POLLUTION BULLETIN

Structure and function of the global ocean microbiome

(2015) S. Sunagawa et al.   SCIENCE

Can DNA-Based Ecosystem Assessments Quantify Species Abundance? Testing Primer Bias and Biomass—Sequence Relationships with an Innovative Metabarcoding Protocol

(2015) Vasco Elbrecht et al.   PLoS One

Cytochrome C oxidase subunit I barcodes provide an efficient tool for Jinqian Baihua She (Bungarus parvus) authentication

(2014) Zhi Chao et al.   Pharmacognosy Magazine

A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents

(2013) Matthieu Leray et al.   Frontiers in Zoology

Redesign of PCR primers for mitochondrial cytochromecoxidase subunit I for marine invertebrates and application in all-taxa biotic surveys

(2013) J. Geller et al.   Molecular Ecology Resources

High sensitivity of 454 pyrosequencing for detection of rare species in aquatic communities

(2013) Aibin Zhan et al.   Methods in Ecology and Evolution

Feeding selectivity in larvae of the European hake (Merluccius merluccius) in relation to ontogeny and visual capabilities

(2011) Elvira Morote et al.   MARINE BIOLOGY

Biodiversity and Ecosystem Function in the Gulf of Maine: Pattern and Role of Zooplankton and Pelagic Nekton

(2011) Catherine L. Johnson et al.   PLoS One

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Multi-decadal oceanic ecological datasets and their application in marine policy and management

(2010) Martin Edwards et al.   TRENDS IN ECOLOGY & EVOLUTION

Zooplankton composition, abundance and distribution in selected south and west coast estuaries in South Africa

(2009) P H Montoya-Maya et al.   AFRICAN JOURNAL OF AQUATIC SCIENCE

Long-term declining trend of zooplankton biomass in the Tropical Atlantic

(2009) S. A. Piontkovski et al.   HYDROBIOLOGIA

The campaign to DNA barcode all fishes, FISH-BOL

(2009) R. D. Ward et al.   JOURNAL OF FISH BIOLOGY

Global latitudinal variations in marine copepod diversity and environmental factors

(2009) I. Rombouts et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A latitudinal diversity gradient in planktonic marine bacteria

(2008) J. A. Fuhrman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ichthyoplankton dynamics and biodiversity in the Gulf of Alaska: Responses to environmental change

(2007) Wiebke J. Boeing et al.   ECOLOGICAL INDICATORS