High sensitivity of 454 pyrosequencing for detection of rare species in aquatic communities

Global Biodiversity Change: The Bad, the Good, and the Unknown

(2012) Henrique Miguel Pereira et al.   Annual Review of Environment and Resources

Culturing captures members of the soil rare biosphere

(2012) Ashley Shade et al.   ENVIRONMENTAL MICROBIOLOGY

Conservation in a cup of water: estimating biodiversity and population abundance from environmental DNA

(2012) DAVID M. LODGE et al.   MOLECULAR ECOLOGY

Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring

(2012) Douglas W. Yu et al.   Methods in Ecology and Evolution

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

CLOTU: An online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation

(2011) Surendra Kumar et al.   BMC BIOINFORMATICS

When should we save the most endangered species?

(2011) Howard B. Wilson et al.   ECOLOGY LETTERS

From molecules to management: Adopting DNA-based methods for monitoring biological invasions in aquatic environments

(2011) John A. Darling et al.   ENVIRONMENTAL RESEARCH

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Monitoring endangered freshwater biodiversity using environmental DNA

(2011) PHILIP FRANCIS THOMSEN et al.   MOLECULAR ECOLOGY

High consistency between replicate 454 pyrosequencing analyses of ectomycorrhizal plant root samples

(2011) Håvard Kauserud et al.   MYCORRHIZA

Molecular Detection of Invasive Species in Heterogeneous Mixtures Using a Microfluidic Carbon Nanotube Platform

(2011) Andrew R. Mahon et al.   PLoS One

Pyrosequencing for Mini-Barcoding of Fresh and Old Museum Specimens

(2011) Shadi Shokralla et al.   PLoS One

Ultra-deep sequencing of foraminiferal microbarcodes unveils hidden richness of early monothalamous lineages in deep-sea sediments

(2011) Béatrice Lecroq et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

“Sight-unseen” detection of rare aquatic species using environmental DNA

(2011) Christopher L. Jerde et al.   Conservation Letters

Invasive Species, Environmental Change and Management, and Health

(2010) Petr Pyšek et al.   Annual Review of Environment and Resources

Use of DNA barcoding to detect invertebrate invasive species from diapausing eggs

(2010) Elizabeta Briski et al.   BIOLOGICAL INVASIONS

Depicting more accurate pictures of protistan community complexity using pyrosequencing of hypervariable SSU rRNA gene regions

(2010) Anke Behnke et al.   ENVIRONMENTAL MICROBIOLOGY

Experimental parameters affecting quantitative PCR ofArtemia franciscana: a model for a marine zooplanktonic target in natural plankton samples

(2010) Joshua A. Mackie et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

Second-generation sequencing derived insights into the temporal biodiversity dynamics of freshwater protists

(2010) SIMON CREER   MOLECULAR ECOLOGY

454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases

(2010) Leho Tedersoo et al.   NEW PHYTOLOGIST

Second-generation environmental sequencing unmasks marine metazoan biodiversity

(2010) Vera G. Fonseca et al.   Nature Communications

Detection of a colonizing, aquatic, non-indigenous species

(2009) Chad T. Harvey et al.   DIVERSITY AND DISTRIBUTIONS

Accurate methods of DNA extraction and PCR-based genotyping for single scallop embryos/larvae long preserved in ethanol

(2008) AIBIN ZHAN et al.   Molecular Ecology Resources