The Tara Oceans voyage reveals global diversity and distribution patterns of marine planktonic ciliates

Declines in both redundant and trace species characterize the latitudinal diversity gradient in tintinnid ciliates

(2016) John R Dolan et al.   ISME Journal

Community ecology in a changing environment: Perspectives from the Quaternary

(2015) Stephen T. Jackson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Eukaryotic plankton diversity in the sunlit ocean

(2015) C. de Vargas et al.   SCIENCE

Mining environmental high-throughput sequence data sets to identify divergent amplicon clusters for phylogenetic reconstruction and morphotype visualization

(2015) Anna Gimmler et al.   Environmental Microbiology Reports

Open science resources for the discovery and analysis of Tara Oceans data

(2015) Stéphane Pesant et al.   Scientific Data

Latitudinal pattern of abundance and composition of ciliate communities in the surface waters of the Atlantic Ocean

(2015) Krzysztof Rychert et al.   OCEANOLOGICAL AND HYDROBIOLOGICAL STUDIES

Protistan diversity in a permanently stratified meromictic lake (Lake Alatsee, SW Germany)

(2014) Andreas Oikonomou et al.   ENVIRONMENTAL MICROBIOLOGY

Pyrosequencing for assessing diversity of eukaryotic microbes: analysis of data on marine planktonic ciliates and comparison with traditional methods

(2014) Luciana F. Santoferrara et al.   ENVIRONMENTAL MICROBIOLOGY

Deep sequencing uncovers protistan plankton diversity in the Portuguese Ria Formosa solar saltern ponds

(2014) Sabine Filker et al.   EXTREMOPHILES

Ciliates and the Rare Biosphere-Community Ecology and Population Dynamics

(2014) Thomas Weisse   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Placing Environmental Next-Generation Sequencing Amplicons from Microbial Eukaryotes into a Phylogenetic Context

(2014) Micah Dunthorn et al.   MOLECULAR BIOLOGY AND EVOLUTION

Swarm: robust and fast clustering method for amplicon-based studies

(2014) Frédéric Mahé et al.   PeerJ

Global marine bacterial diversity peaks at high latitudes in winter

(2013) Joshua Ladau et al.   ISME Journal

The D1-D2 region of the large subunit ribosomal DNA as barcode for ciliates

(2013) T. Stoeck et al.   Molecular Ecology Resources

Comparing the Hyper-Variable V4 and V9 Regions of the Small Subunit rDNA for Assessment of Ciliate Environmental Diversity

(2012) Micah Dunthorn et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Are non-loricate ciliates a primary contributor to ecological pattern of planktonic ciliate communities? A case study in Jiaozhou Bay, northern China

(2012) Yong Jiang et al.   JOURNAL OF THE MARINE BIOLOGICAL ASSOCIATION OF THE UNITED KINGDOM

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy

(2012) Laure Guillou et al.   NUCLEIC ACIDS RESEARCH

Meta-analyses of environmental sequence data identify anoxia and salinity as parameters shaping ciliate communities

(2012) Dominik Forster et al.   SYSTEMATICS AND BIODIVERSITY

Diversity and endemism of ciliates inhabiting Neotropical phytotelmata

(2012) Micah Dunthorn et al.   SYSTEMATICS AND BIODIVERSITY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Microbial eukaryote life in the new hypersaline deep-sea basin Thetis

(2011) Alexandra Stock et al.   EXTREMOPHILES

Class Cariacotrichea, a novel ciliate taxon from the anoxic Cariaco Basin, Venezuela

(2011) W. Orsi et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Global Diversity of Aloricate Oligotrichea (Protista, Ciliophora, Spirotricha) in Marine and Brackish Sea Water

(2011) Sabine Agatha   PLoS One

A Holistic Approach to Marine Eco-Systems Biology

(2011) Eric Karsenti et al.   PLOS BIOLOGY

JAGUC — A SOFTWARE PACKAGE FOR ENVIRONMENTAL DIVERSITY ANALYSES

(2011) MARKUS E. NEBEL et al.   Journal of Bioinformatics and Computational Biology

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Antarctic Marine Biodiversity – What Do We Know About the Distribution of Life in the Southern Ocean?

(2010) Huw J. Griffiths   PLoS One

The Impact of Climate Change on the World's Marine Ecosystems

(2010) O. Hoegh-Guldberg et al.   SCIENCE

Molecular and morphological methods for identifying plankton: what makes a successful marriage?

(2009) G. B. McManus et al.   JOURNAL OF PLANKTON RESEARCH

Development of a logistic regression model for the prediction of toxigenic Pseudo-nitzschia blooms in Monterey Bay, California

(2009) JQ Lane et al.   MARINE ECOLOGY PROGRESS SERIES

A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes

(2009) Linda A. Amaral-Zettler et al.   PLoS One

Protistan community patterns within the brine and halocline of deep hypersaline anoxic basins in the eastern Mediterranean Sea

(2008) Virginia Edgcomb et al.   EXTREMOPHILES