DNA in a bottle—Rapid metabarcoding survey for early alerts of invasive species in ports

DNA extraction replicates improve diversity and compositional dissimilarity in metabarcoding of eukaryotes in marine sediments

(2017) Anders Lanzén et al.   PLoS One

Methods to maximise recovery of environmental DNA from water samples

(2017) Rheyda Hinlo et al.   PLoS One

Novel tools for early detection of a global aquatic invasive, the zebra mussel Dreissena polymorpha

(2016) Alba Ardura et al.   AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS

Metabarcoding improves detection of eukaryotes from early biofouling communities: implications for pest monitoring and pathway management

(2016) Anastasija Zaiko et al.   BIOFOULING

Understanding environmental DNA detection probabilities: A case study using a stream-dwelling char Salvelinus fontinalis

(2016) Taylor M. Wilcox et al.   BIOLOGICAL CONSERVATION

Is qualitative and quantitative metabarcoding of dung fauna biodiversity feasible?

(2016) Wolf U. Blanckenhorn et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

A quantitative protocol for DNA metabarcoding of springtails (Collembola)

(2016) Seikoh Saitoh et al.   GENOME

DNA barcoding for assessment of exotic molluscs associated with maritime ports in northern Iberia

(2016) Ivana Pejovic et al.   Marine Biology Research

Barcodes of marine invertebrates from north Iberian ports: Native diversity and resistance to biological invasions

(2016) L. Miralles et al.   MARINE POLLUTION BULLETIN

Rapid assessment of target species: Byssate bivalves in a large tropical port

(2016) Dan Minchin et al.   MARINE POLLUTION BULLETIN

Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding

(2016) Alice Valentini et al.   MOLECULAR ECOLOGY

Assessing the cost-efficiency of environmental DNA sampling

(2016) Adam S. Smart et al.   Methods in Ecology and Evolution

Critical considerations for the application of environmental DNA methods to detect aquatic species

(2016) Caren S. Goldberg et al.   Methods in Ecology and Evolution

Diversity of planktonic fish larvae along a latitudinal gradient in the Eastern Atlantic Ocean estimated through DNA barcodes

(2016) Alba Ardura et al.   PeerJ

Spatio-temporal monitoring of deep-sea communities using metabarcoding of sediment DNA and RNA

(2016) Magdalena Guardiola et al.   PeerJ

Fish environmental DNA is more concentrated in aquatic sediments than surface water

(2015) Cameron R. Turner et al.   BIOLOGICAL CONSERVATION

Moving environmental DNA methods from concept to practice for monitoring aquatic macroorganisms

(2015) Caren S. Goldberg et al.   BIOLOGICAL CONSERVATION

Using eDNA to develop a national citizen science-based monitoring programme for the great crested newt (Triturus cristatus)

(2015) Jeremy Biggs et al.   BIOLOGICAL CONSERVATION

Fishing in the Water: Effect of Sampled Water Volume on Environmental DNA-Based Detection of Macroinvertebrates

(2015) Elvira Mächler et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Improving efficiency and reliability of environmental DNA analysis for silver carp

(2015) Jon J. Amberg et al.   JOURNAL OF GREAT LAKES RESEARCH

Environmental DNA evidence of transfer of North Sea molluscs across tropical waters through ballast water

(2015) Alba Ardura et al.   JOURNAL OF MOLLUSCAN STUDIES

Detecting nuisance species using NGST: Methodology shortcomings and possible application in ballast water monitoring

(2015) Anastasija Zaiko et al.   MARINE ENVIRONMENTAL RESEARCH

Quantitative DNA metabarcoding: improved estimates of species proportional biomass using correction factors derived from control material

(2015) Austen C. Thomas et al.   Molecular Ecology Resources

Quantification of mesocosm fish and amphibian species diversity via environmental DNA metabarcoding

(2015) Nathan T. Evans et al.   Molecular Ecology Resources

Marinas may act as hubs for the spread of the pseudo-indigenous bryozoan Amathia verticillata (Delle Chiaje, 1822) and its associates

(2015) Agnese Marchini et al.   SCIENTIA MARINA

DNA metabarcoding and the cytochrome c oxidase subunit I marker: not a perfect match

(2014) B. E. Deagle et al.   Biology Letters

REVIEW: The detection of aquatic animal species using environmental DNA - a review of eDNA as a survey tool in ecology

(2014) Helen C. Rees et al.   JOURNAL OF APPLIED ECOLOGY

Does GenBank provide a reliable DNA barcode reference to identify small alien oysters invading the Mediterranean Sea?

(2014) F. Crocetta et al.   JOURNAL OF THE MARINE BIOLOGICAL ASSOCIATION OF THE UNITED KINGDOM

Environmental metabarcodes for insects:in silicoPCR reveals potential for taxonomic bias

(2014) Laurence J. Clarke et al.   Molecular Ecology Resources

Replication levels, false presences and the estimation of the presence/absence from eDNA metabarcoding data

(2014) Gentile F. Ficetola et al.   Molecular Ecology Resources

Estimating occupancy and abundance of stream amphibians using environmental DNA from filtered water samples

(2013) David S. Pilliod et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Redesign of PCR primers for mitochondrial cytochromecoxidase subunit I for marine invertebrates and application in all-taxa biotic surveys

(2013) J. Geller et al.   Molecular Ecology Resources

DNA metabarcoding multiplexing and validation of data accuracy for diet assessment: application to omnivorous diet

(2013) M. De Barba et al.   Molecular Ecology Resources

Robust Detection of Rare Species Using Environmental DNA: The Importance of Primer Specificity

(2013) Taylor M. Wilcox et al.   PLoS One

A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System

(2013) Sujeevan Ratnasingham et al.   PLoS One

Evaluating Detection Limits of Next-Generation Sequencing for the Surveillance and Monitoring of International Marine Pests

(2013) Xavier Pochon et al.   PLoS One

Applications of DNA barcoding to fish landings: authentication and diversity assessmente

(2013) Alba Ardura et al.   ZooKeys

An update on DNA barcoding: low species coverage and numerous unidentified sequences

(2012) Shiyang Kwong et al.   CLADISTICS

Towards next-generation biodiversity assessment using DNA metabarcoding

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

PCR Primers for Metazoan Nuclear 18S and 28S Ribosomal DNA Sequences

(2012) Ryuji J. Machida et al.   PLoS One

Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring

(2012) Douglas W. Yu et al.   Methods in Ecology and Evolution

WebMGA: a customizable web server for fast metagenomic sequence analysis

(2011) Sitao Wu et al.   BMC GENOMICS

“Sight-unseen” detection of rare aquatic species using environmental DNA

(2011) Christopher L. Jerde et al.   Conservation Letters

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Species detection using environmental DNA from water samples

(2008) G. F. Ficetola et al.   Biology Letters

Assessing the global threat of invasive species to marine biodiversity

(2008) Jennifer L Molnar et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT