Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding

Choice of capture and extraction methods affect detection of freshwater biodiversity from environmental DNA

(2015) Kristy Deiner et al.   BIOLOGICAL CONSERVATION

Quantification of eDNA shedding rates from invasive bighead carp Hypophthalmichthys nobilis and silver carp Hypophthalmichthys molitrix

(2015) Katy E. Klymus et al.   BIOLOGICAL CONSERVATION

Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity

(2015) Philip Francis Thomsen et al.   BIOLOGICAL CONSERVATION

Using eDNA to develop a national citizen science-based monitoring programme for the great crested newt (Triturus cristatus)

(2015) Jeremy Biggs et al.   BIOLOGICAL CONSERVATION

Tag jumps illuminated - reducing sequence-to-sample misidentifications in metabarcoding studies

(2015) Ida Baerholm Schnell et al.   Molecular Ecology Resources

MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species

(2015) M. Miya et al.   Royal Society Open Science

unmarked: AnRPackage for Fitting Hierarchical Models of Wildlife Occurrence and Abundance

(2015) Ian Fiske et al.   Journal of Statistical Software

DNA metabarcoding and the cytochrome c oxidase subunit I marker: not a perfect match

(2014) B. E. Deagle et al.   Biology Letters

Electrofishing efficiency in low conductivity neotropical streams: towards a non-destructive fish sampling method

(2014) L. Allard et al.   FISHERIES MANAGEMENT AND ECOLOGY

Environmental DNA surveillance for invertebrate species: advantages and technical limitations to detect invasive crayfishProcambarus clarkiiin freshwater ponds

(2014) Anne Tréguier et al.   JOURNAL OF APPLIED ECOLOGY

Biodiversity: Life ­– a status report

(2014) Richard Monastersky   NATURE

Using Environmental DNA to Census Marine Fishes in a Large Mesocosm

(2014) Ryan P. Kelly et al.   PLoS One

Harnessing DNA to improve environmental management

(2014) R. P. Kelly et al.   SCIENCE

The biodiversity of species and their rates of extinction, distribution, and protection

(2014) S. L. Pimm et al.   SCIENCE

Meta-genomic surveillance of invasive species in the bait trade

(2014) Andrew R. Mahon et al.   Conservation Genetics Resources

IUCN and perspectives on biodiversity conservation in a changing world

(2013) Carijn Beumer et al.   BIODIVERSITY AND CONSERVATION

DNA metabarcoding multiplexing and validation of data accuracy for diet assessment: application to omnivorous diet

(2013) M. De Barba et al.   Molecular Ecology Resources

Development of a fish-based index to assess the eutrophication status of European lakes

(2012) C. Argillier et al.   HYDROBIOLOGIA

Improved detection of an alien invasive species through environmental DNA barcoding: the example of the American bullfrogLithobates catesbeianus

(2012) Tony Dejean et al.   JOURNAL OF APPLIED ECOLOGY

Bioinformatic challenges for DNA metabarcoding of plants and animals

(2012) ERIC COISSAC et al.   MOLECULAR ECOLOGY

DNA from soil mirrors plant taxonomic and growth form diversity

(2012) N. G. YOCCOZ et al.   MOLECULAR ECOLOGY

Environmental DNA

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Estimation of Fish Biomass Using Environmental DNA

(2012) Teruhiko Takahara et al.   PLoS One

Detection of a Diverse Marine Fish Fauna Using Environmental DNA from Seawater Samples

(2012) Philip Francis Thomsen et al.   PLoS One

From molecules to management: Adopting DNA-based methods for monitoring biological invasions in aquatic environments

(2011) John A. Darling et al.   ENVIRONMENTAL RESEARCH

Monitoring endangered freshwater biodiversity using environmental DNA

(2011) PHILIP FRANCIS THOMSEN et al.   MOLECULAR ECOLOGY

Who is eating what: diet assessment using next generation sequencing

(2011) FRANCOIS POMPANON et al.   MOLECULAR ECOLOGY

Has the Earth’s sixth mass extinction already arrived?

(2011) Anthony D. Barnosky et al.   NATURE

ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis

(2011) Tiayyba Riaz et al.   NUCLEIC ACIDS RESEARCH

Population Size Influences Amphibian Detection Probability: Implications for Biodiversity Monitoring Programs

(2011) Lorenzo G. Tanadini et al.   PLoS One

The quality of name-based species records in databases

(2011) António M. Santos et al.   TRENDS IN ECOLOGY & EVOLUTION

An In silico approach for the evaluation of DNA barcodes

(2010) Gentile Ficetola et al.   BMC GENOMICS

ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases

(2010) Eva Bellemain et al.   BMC MICROBIOLOGY

Imperfect detection and its consequences for monitoring for conservation

(2008) M. Kéry et al.   COMMUNITY ECOLOGY

Widespread unidirectional transfer of mitochondrial DNA: a case in western Palaearctic water frogs

(2008) J. PLÖTNER et al.   JOURNAL OF EVOLUTIONARY BIOLOGY