Applying model approaches in non-model systems: A review and case study on coral cell culture

Tracing the Trophic Plasticity of the Coral–Dinoflagellate Symbiosis Using Amino Acid Compound-Specific Stable Isotope Analysis

(2021) Christine Ferrier-Pagès et al.   Microorganisms

Regulation of coral calcification by the acid-base sensing enzyme soluble adenylyl cyclase

(2020) Katie L. Barott et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Evaluation of laser scanning confocal microscopy as a method for characterizing reef-building coral tissue thickness and Symbiodiniaceae fluorescence

(2020) A. S. Huffmyer et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

The quest for an animal model of coral health and disease

(2020) Ellen P. Neff   LAB ANIMAL

Unlocking the black‐box of inorganic carbon‐uptake and utilization strategies among coral endosymbionts (Symbiodiniaceae)

(2020) Mickael Ros et al.   LIMNOLOGY AND OCEANOGRAPHY

Exaiptasia diaphana from the great barrier reef: a valuable resource for coral symbiosis research

(2020) Ashley M. Dungan et al.   SYMBIOSIS

Subcellular Chemical Imaging: New Avenues in Cell Biology

(2020) Johan Decelle et al.   TRENDS IN CELL BIOLOGY

Past, Present, and Future of Affinity-based Cell Separation Technologies

(2020) Kaitlyn Bacon et al.   Acta Biomaterialia

Optical Feedback Loop Involving Dinoflagellate Symbiont and Scleractinian Host Drives Colorful Coral Bleaching

(2020) Elena Bollati et al.   CURRENT BIOLOGY

Host and Symbiont Cell Cycle Coordination Is Mediated by Symbiotic State, Nutrition, and Partner Identity in a Model Cnidarian-Dinoflagellate Symbiosis

(2020) Trevor R. Tivey et al.   mBio

Coral reef survival under accelerating ocean deoxygenation

(2020) David J. Hughes et al.   Nature Climate Change

Science-based approach to using growth rate to assess coral performance and restoration outcomes

(2020) Peter J. Edmunds et al.   Biology Letters

A tentacle for every occasion: comparing the hunting tentacles and sweeper tentacles, used for territorial competition, in the coral Galaxea fascicularis

(2020) Oshra Yosef et al.   BMC GENOMICS

Lineage dynamics of the endosymbiotic cell type in the soft coral Xenia

(2020) Minjie Hu et al.   NATURE

STAGdb: a 30K SNP genotyping array and Science Gateway for Acropora corals and their dinoflagellate symbionts

(2020) S. A. Kitchen et al.   Scientific Reports

Full in vivo characterization of carbonate chemistry at the site of calcification in corals

(2019) Duygu S. Sevilgen et al.   Science Advances

Genome analysis of the rice coral Montipora capitata

(2019) Alexander Shumaker et al.   Scientific Reports

Adaptive signatures in thermal performance of the temperate coral Astrangia poculata

(2019) Hannah E. Aichelman et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Investigating marine bio-calcification mechanisms in a changing ocean with in vivo and high-resolution ex vivo Raman spectroscopy

(2019) Thomas M. DeCarlo et al.   GLOBAL CHANGE BIOLOGY

Relative stability of the Pocillopora acuta microbiome throughout a thermal stress event

(2019) Hannah E. Epstein et al.   CORAL REEFS

The Whole-Genome Sequence of the Coral Acropora millepora

(2019) Hua Ying et al.   Genome Biology and Evolution

Proteomics quantifies protein expression changes in a model cnidarian colonised by a thermally tolerant but suboptimal symbiont

(2019) Ashley E. Sproles et al.   ISME Journal

The coral ecosphere: A unique coral reef habitat that fosters coral-microbial interactions

(2019) Laura Weber et al.   LIMNOLOGY AND OCEANOGRAPHY

Mineral formation in the primary polyps of pocilloporoid corals

(2019) Maayan Neder et al.   Acta Biomaterialia

Thermal performance of scleractinian corals along a latitudinal gradient on the Great Barrier Reef

(2019) S. Jurriaans et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Impact of ocean acidification on crystallographic vital effect of the coral skeleton

(2019) Ismael Coronado et al.   Nature Communications

Live imaging of Aiptasia larvae, a model system for coral and anemone bleaching, using a simple microfluidic device

(2019) Will Van Treuren et al.   Scientific Reports

Box, stalked, and upside-down? Draft genomes from diverse jellyfish (Cnidaria, Acraspeda) lineages: Alatina alata (Cubozoa), Calvadosia cruxmelitensis (Staurozoa), and Cassiopea xamachana (Scyphozoa)

(2019) Aki Ohdera et al.   GigaScience

Microbial indicators of environmental perturbations in coral reef ecosystems

(2019) Bettina Glasl et al.   Microbiome

Nearshore coral growth declining on the Mesoamerican Barrier Reef System

(2019) Justin H. Baumann et al.   GLOBAL CHANGE BIOLOGY

The past, present, and future of coral heat stress studies

(2019) Maha J. Cziesielski et al.   Ecology and Evolution

Heat‐induced shift in coral microbiome reveals several members of the Rhodobacteraceae family as indicator species for thermal stress in Porites lutea

(2019) Wirulda Pootakham et al.   MicrobiologyOpen

A genomic view of the reef-building coral Porites lutea and its microbial symbionts

(2019) Steven J. Robbins et al.   Nature Microbiology

Coral bleaching patterns are the outcome of complex biological and environmental networking

(2019) David J. Suggett et al.   GLOBAL CHANGE BIOLOGY

Sources, presence and potential effects of contaminants of emerging concern in the marine environments of the Great Barrier Reef and Torres Strait, Australia

(2019) Frederieke J. Kroon et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Unknown to Known: Advancing Knowledge of Coral Gene Function

(2019) Phillip A. Cleves et al.   TRENDS IN GENETICS

Beneath the surface: community assembly and functions of the coral skeleton microbiome

(2019) Francesco Ricci et al.   Microbiome

Cnidarian Cell Type Diversity and Regulation Revealed by Whole-Organism Single-Cell RNA-Seq

(2018) Arnau Sebé-Pedrós et al.   CELL

Cell Cycle Dynamics of Cultured Coral Endosymbiotic Microalgae (Symbiodinium ) Across Different Types (Species) Under Alternate Light and Temperature Conditions

(2018) Lisa Fujise et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

CRISPR/Cas9-mediated genome editing in a reef-building coral

(2018) Phillip A. Cleves et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Coral resistance to ocean acidification linked to increased calcium at the site of calcification

(2018) T. M. DeCarlo et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Spatial and temporal patterns of mass bleaching of corals in the Anthropocene

(2018) Terry P. Hughes et al.   SCIENCE

First record of bioaccumulation and bioconcentration of metals in Scleractinian corals and their algal symbionts from Kharg and Lark coral reefs (Persian Gulf, Iran)

(2018) Ali Ranjbar Jafarabadi et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Progress of Inertial Microfluidics in Principle and Application

(2018) Yixing Gou et al.   SENSORS

Early skeletal colonization of the coral holobiont by the microboring Ulvophyceae Ostreobium sp.

(2018) A. Massé et al.   Scientific Reports

Evolutionary conservation of the antimicrobial function of mucus: a first defence against infection

(2018) Cassie R Bakshani et al.   npj Biofilms and Microbiomes

Systematic Revision of Symbiodiniaceae Highlights the Antiquity and Diversity of Coral Endosymbionts

(2018) Todd C. LaJeunesse et al.   CURRENT BIOLOGY

In-vitro and in-vivo evaluation of hemostatic potential of decellularized ECM hydrogels

(2018) Reiza D. Ventura et al.   MATERIALS LETTERS

Minimum information reporting in bio–nano experimental literature

(2018) Matthew Faria et al.   Nature Nanotechnology

Comparative analysis of the Pocillopora damicornis genome highlights role of immune system in coral evolution

(2018) R. Cunning et al.   Scientific Reports

DNA methylation regulates transcriptional homeostasis of algal endosymbiosis in the coral model Aiptasia

(2018) Yong Li et al.   Science Advances

Partner switching and metabolic flux in a model cnidarian–dinoflagellate symbiosis

(2018) Jennifer L. Matthews et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Securing a Long-term Future for Coral Reefs

(2018) Ove Hoegh-Guldberg et al.   TRENDS IN ECOLOGY & EVOLUTION

Rethinking the Coral Microbiome: Simplicity Exists within a Diverse Microbial Biosphere

(2018) Alejandra Hernandez-Agreda et al.   mBio

The impact of autotrophic versus heterotrophic nutritional pathways on colony health and wound recovery in corals

(2018) Elizabeth M. Burmester et al.   Ecology and Evolution

The cell specificity of gene expression in the response to heat stress in corals

(2017) Nikki Traylor-Knowles et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Validation and description of Symbiodinium microadriaticum , the type species of Symbiodinium (Dinophyta)

(2017) Todd C. LaJeunesse   JOURNAL OF PHYCOLOGY

Molecular and geochemical perspectives on the influence of CO2 on calcification in coral cell cultures

(2017) Jeana L. Drake et al.   LIMNOLOGY AND OCEANOGRAPHY

Global warming and recurrent mass bleaching of corals

(2017) Terry P. Hughes et al.   NATURE

Mapping carbon fate during bleaching in a model cnidarian symbiosis: the application of 13 C metabolomics

(2017) Katie E. Hillyer et al.   NEW PHYTOLOGIST

Symbiodinium glynnii sp. nov., a species of stress-tolerant symbiotic dinoflagellates from pocilloporid and montiporid corals in the Pacific Ocean

(2017) Drew C. Wham et al.   PHYCOLOGIA

Optimal nutrient exchange and immune responses operate in partner specificity in the cnidarian-dinoflagellate symbiosis

(2017) Jennifer L. Matthews et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Defining the Core Microbiome in Corals’ Microbial Soup

(2017) Alejandra Hernandez-Agreda et al.   TRENDS IN MICROBIOLOGY

Comparative analysis of the genomes of Stylophora pistillata and Acropora digitifera provides evidence for extensive differences between species of corals

(2017) Christian R. Voolstra et al.   Scientific Reports

Intra-colony disease progression induces fragmentation of coral fluorescent pigments

(2017) Jamie M. Caldwell et al.   Scientific Reports

A genomic glance through the fog of plasticity and diversification in Pocillopora

(2017) Erika C. Johnston et al.   Scientific Reports

Patterns of bleaching and recovery of Montipora capitata in Kāne‘ohe Bay, Hawai‘i, USA

(2016) R Cunning et al.   MARINE ECOLOGY PROGRESS SERIES

Temporal and spatial expression patterns of biomineralization proteins during early development in the stony coralPocillopora damicornis

(2016) Tali Mass et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Underwater microscopy for in situ studies of benthic ecosystems

(2016) Andrew D. Mullen et al.   Nature Communications

A coral-on-a-chip microfluidic platform enabling live-imaging microscopy of reef-building corals

(2016) Orr H. Shapiro et al.   Nature Communications

Comparative genomics explains the evolutionary success of reef-forming corals

(2016) Debashish Bhattacharya et al.   eLife

Patterns of bleaching and recovery of Montipora capitata in Kāne‘ohe Bay, Hawai‘i, USA

(2016) R Cunning et al.   MARINE ECOLOGY PROGRESS SERIES

Nutritional input from dinoflagellate symbionts in reef-building corals is minimal during planula larval life stage

(2016) C. Kopp et al.   Science Advances

Aiptasia sp. larvae as a model to reveal mechanisms of symbiont selection in cnidarians

(2016) Iliona Wolfowicz et al.   Scientific Reports

Toxicopathological Effects of the Sunscreen UV Filter, Oxybenzone (Benzophenone-3), on Coral Planulae and Cultured Primary Cells and Its Environmental Contamination in Hawaii and the U.S. Virgin Islands

(2015) C. A. Downs et al.   ARCHIVES OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY

GigaTON: an extensive publicly searchable database providing a new reference transcriptome in the pacific oyster Crassostrea gigas

(2015) Guillaume Riviere et al.   BMC BIOINFORMATICS

Use of Cause-and-Effect Analysis to Design a High-Quality Nanocytotoxicology Assay

(2015) Matthias Rösslein et al.   CHEMICAL RESEARCH IN TOXICOLOGY

Resilience of coral calcification to extreme temperature variations in the Kimberley region, northwest Australia

(2015) S. S. Dandan et al.   CORAL REEFS

Using demographic models to project the effects of climate change on scleractinian corals: Pocillopora damicornis as a case study

(2015) L. Bramanti et al.   CORAL REEFS

Towards a vitrification-based cryopreservation protocol for the coral Pocillopora damicornis L.: Tolerance of tissue balls to 4.5M cryoprotectant solutions

(2015) Lionel Feuillassier et al.   CRYOBIOLOGY

Preconditioning in the reef-building coral Pocillopora damicornis and the potential for trans-generational acclimatization in coral larvae under future climate change conditions

(2015) H. M. Putnam et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Differential carbon utilization and asexual reproduction under elevatedpCO2conditions in the model anemone,Exaiptasia pallida, hosting different symbionts

(2015) Kenneth D. Hoadley et al.   LIMNOLOGY AND OCEANOGRAPHY

Species-specific differences in thermal tolerance may define susceptibility to intracellular acidosis in reef corals

(2015) Emma M. Gibbin et al.   MARINE BIOLOGY

Defining the Anthropocene

(2015) Simon L. Lewis et al.   NATURE

Functional diversity of photobiological traits within the genusSymbiodiniumappears to be governed by the interaction of cell size with cladal designation

(2015) David J. Suggett et al.   NEW PHYTOLOGIST

Experimental ocean acidification alters the allocation of metabolic energy

(2015) T.-C. Francis Pan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gains and losses of coral skeletal porosity changes with ocean acidification acclimation

(2015) Paola Fantazzini et al.   Nature Communications

Physiological response to elevated temperature and pCO2 varies across four Pacific coral species: Understanding the unique host+symbiont response

(2015) Kenneth D. Hoadley et al.   Scientific Reports

Intracellular pH and its response to CO2-driven seawater acidification in symbiotic versus non-symbiotic coral cells

(2014) E. M. Gibbin et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Surviving Coral Bleaching Events: Porites Growth Anomalies on the Great Barrier Reef

(2014) Neal E. Cantin et al.   PLoS One

Coral host cells acidify symbiotic algal microenvironment to promote photosynthesis

(2014) Katie L. Barott et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Vortical ciliary flows actively enhance mass transport in reef corals

(2014) Orr H. Shapiro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

With eyes wide open: a revision of species within and closely related to thePocillopora damicornisspecies complex (Scleractinia; Pocilloporidae) using morphology and genetics

(2014) Sebastian Schmidt-Roach et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Trace element profiles of the sea anemoneAnemonia viridisliving nearby a natural CO2vent

(2014) Rael Horwitz et al.   PeerJ

Scleractinian coral cell proliferation is reduced in primary culture of suspended multicellular aggregates compared to polyps

(2013) A. Lecointe et al.   CYTOTECHNOLOGY

Establishment of primary cell culture from the temperate symbiotic cnidarian, Anemonia viridis

(2013) Stéphanie Barnay-Verdier et al.   CYTOTECHNOLOGY

Toxicological effects of the sunscreen UV filter, benzophenone-2, on planulae and in vitro cells of the coral, Stylophora pistillata

(2013) C. A. Downs et al.   ECOTOXICOLOGY

The Skeletal Proteome of the Coral Acropora millepora: The Evolution of Calcification by Co-Option and Domain Shuffling

(2013) Paula Ramos-Silva et al.   MOLECULAR BIOLOGY AND EVOLUTION

Proteomic analysis of skeletal organic matrix from the stony coral Stylophora pistillata

(2013) J. L. Drake et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effects of cold stress and heat stress on coral fluorescence in reef-building corals

(2013) Melissa S. Roth et al.   Scientific Reports

Caenorhabditis elegans, a Model Organism for Investigating Immunity

(2012) Elizabeth K. Marsh et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

C. elegans Detects Pathogen-Induced Translational Inhibition to Activate Immune Signaling

(2012) Tiffany L. Dunbar et al.   Cell Host & Microbe

A single-cell view of ammonium assimilation in coral–dinoflagellate symbiosis

(2012) Mathieu Pernice et al.   ISME Journal

Cultivating endosymbionts — Host environmental mimics support the survival of Symbiodinium C15 ex hospite

(2012) Thomas Krueger et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Dead or alive? Viability assessment of micro- and mesoplankton

(2012) E.-M. Zetsche et al.   JOURNAL OF PLANKTON RESEARCH

The physiological and molecular responses of larvae from the reef-building coral Pocillopora damicornis exposed to near-future increases in temperature and pCO2

(2012) H. M. Putnam et al.   MARINE BIOLOGY

Cell Biology of Cnidarian-Dinoflagellate Symbiosis

(2012) S. K. Davy et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Aragonite Precipitation by “Proto-Polyps” in Coral Cell Cultures

(2012) Tali Mass et al.   PLoS One

Live Tissue Imaging Shows Reef Corals Elevate pH under Their Calcifying Tissue Relative to Seawater

(2011) Alexander Venn et al.   PLoS One

Corals Use Similar Immune Cells and Wound-Healing Processes as Those of Higher Organisms

(2011) Caroline V. Palmer et al.   PLoS One

A Connection between Colony Biomass and Death in Caribbean Reef-Building Corals

(2011) Daniel J. Thornhill et al.   PLoS One

Fluorescence of coral larvae predicts their settlement response to crustose coralline algae and reflects stress

(2011) C. D. Kenkel et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Calcein labelling and electrophysiology: insights on coral tissue permeability and calcification

(2011) E. Tambutte et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Long-standing environmental conditions, geographic isolation and host-symbiont specificity influence the relative ecological dominance and genetic diversification of coral endosymbionts in the genusSymbiodinium

(2010) Todd C. LaJeunesse et al.   JOURNAL OF BIOGEOGRAPHY

The physiological response of reef corals to diel fluctuations in seawater temperature

(2010) Hollie M. Putnam et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Immune defenses of healthy, bleached and diseased Montastraea faveolata during a natural bleaching event

(2009) LD Mydlarz et al.   DISEASES OF AQUATIC ORGANISMS

In vitro cell-toxicity screening as an alternative animal model for coral toxicology: effects of heat stress, sulfide, rotenone, cyanide, and cuprous oxide on cell viability and mitochondrial function

(2009) Craig A. Downs et al.   ECOTOXICOLOGY

The onset of microbial associations in the coral Pocillopora meandrina

(2009) Amy Apprill et al.   ISME Journal

Change in zooxanthellae and mucocyte tissue density as an adaptive response to environmental stress by the coral, Montastraea annularis

(2009) Alan M. Piggot et al.   MARINE BIOLOGY

Imaging intracellular pH in a reef coral and symbiotic anemone

(2009) A. A. Venn et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Morphological plasticity in scleractinian corals

(2008) Peter A. Todd   BIOLOGICAL REVIEWS

Cell cultures from the symbiotic soft coral Sinularia flexibilis

(2008) Mohammad K. Khalesi   IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-ANIMAL

Photosynthetic symbioses in animals

(2008) A.A. Venn et al.   JOURNAL OF EXPERIMENTAL BOTANY

Cell biology in model systems as the key to understanding corals

(2008) Virginia M. Weis et al.   TRENDS IN ECOLOGY & EVOLUTION

Evolution of complex structures: minicollagens shape the cnidarian nematocyst

(2008) Charles N. David et al.   TRENDS IN GENETICS

Comparison of four different colorimetric and fluorometric cytotoxicity assays in a zebrafish liver cell line

(2008) Stephanie K Bopp et al.   BMC Pharmacology & Toxicology