The coral ecosphere: A unique coral reef habitat that fosters coral-microbial interactions

Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny

(2018) F. Joseph Pollock et al.   Nature Communications

Cascading influence of inorganic nitrogen sources on DOM production, composition, lability and microbial community structure in the open ocean

(2017) S. J. Goldberg et al.   ENVIRONMENTAL MICROBIOLOGY

Excess labile carbon promotes the expression of virulence factors in coral reef bacterioplankton

(2017) Anny Cárdenas et al.   ISME Journal

Annual community patterns are driven by seasonal switching between closely related marine bacteria

(2017) Christopher S Ward et al.   ISME Journal

Bacterial Community Associated with the Reef Coral Mussismilia braziliensis's Momentum Boundary Layer over a Diel Cycle

(2017) Cynthia B. Silveira et al.   Frontiers in Microbiology

Aura-biomes are present in the water layer above coral reef benthic macro-organisms

(2017) Kevin Walsh et al.   PeerJ

Optimization of DNA extraction for advancing coral microbiota investigations

(2017) Laura Weber et al.   Microbiome

Zooming in on the phycosphere: the ecological interface for phytoplankton–bacteria relationships

(2017) Justin R. Seymour et al.   Nature Microbiology

Insights into the Coral Microbiome: Underpinning the Health and Resilience of Reef Ecosystems

(2016) David G. Bourne et al.   Annual Review of Microbiology

FMAP: Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies

(2016) Jiwoong Kim et al.   BMC BIOINFORMATICS

Differential specificity between closely related corals and abundant Endozoicomonas endosymbionts across global scales

(2016) Matthew J Neave et al.   ISME Journal

The microbiome of coral surface mucus has a key role in mediating holobiont health and survival upon disturbance

(2016) Bettina Glasl et al.   ISME Journal

Multifaceted impacts of the stony coralPorites astreoideson picoplankton abundance and community composition

(2016) Sean P. McNally et al.   LIMNOLOGY AND OCEANOGRAPHY

Species-specific control of external superoxide levels by the coral holobiont during a natural bleaching event

(2016) Julia M. Diaz et al.   Nature Communications

Genomic Insight into the Host–Endosymbiont Relationship of Endozoicomonas montiporae CL-33T with its Coral Host

(2016) Jiun-Yan Ding et al.   Frontiers in Microbiology

Global microbialization of coral reefs

(2016) Andreas F. Haas et al.   Nature Microbiology

Distinguishing between Microbial Habitats Unravels Ecological Complexity in Coral Microbiomes

(2016) Amy Apprill et al.   mSystems

Does Dark-Spot Syndrome Experimentally Transmit among Caribbean Corals?

(2016) Carly J. Randall et al.   PLoS One

Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton

(2015) A Apprill et al.   AQUATIC MICROBIAL ECOLOGY

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

Chemotaxis by natural populations of coral reef bacteria

(2015) Jessica Tout et al.   ISME Journal

Biogenesis of the lysosome-derived vacuole containing Coxiella burnetii

(2015) Lara J. Kohler et al.   MICROBES AND INFECTION

How bacterial pathogens colonize their hosts and invade deeper tissues

(2015) David Ribet et al.   MICROBES AND INFECTION

KEGG as a reference resource for gene and protein annotation

(2015) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Minimum entropy decomposition: Unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences

(2014) A Murat Eren et al.   ISME Journal

Variability in Microbial Community Composition and Function Between Different Niches Within a Coral Reef

(2014) Jessica Tout et al.   MICROBIAL ECOLOGY

Vortical ciliary flows actively enhance mass transport in reef corals

(2014) Orr H. Shapiro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Local genomic adaptation of coral reef-associated microbiomes to gradients of natural variability and anthropogenic stressors

(2014) L. W. Kelly et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A bacterial pathogen uses dimethylsulfoniopropionate as a cue to target heat-stressed corals

(2013) Melissa Garren et al.   ISME Journal

Coral and macroalgal exudates vary in neutral sugar composition and differentially enrich reef bacterioplankton lineages

(2013) Craig E Nelson et al.   ISME Journal

Metagenomic Analysis of Healthy and White Plague-Affected Mussismilia braziliensis Corals

(2013) Gizele D. Garcia et al.   MICROBIAL ECOLOGY

Visualization of oxygen distribution patterns caused by coral and algae

(2013) Andreas F. Haas et al.   PeerJ

Evolution of Two-Component Signal Transduction Systems

(2012) Emily J. Capra et al.   Annual Review of Microbiology

Specificity of Associations between Bacteria and the Coral Pocillopora meandrina during Early Development

(2012) Amy Apprill et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Unseen players shape benthic competition on coral reefs

(2012) Katie L. Barott et al.   TRENDS IN MICROBIOLOGY

Black reefs: iron-induced phase shifts on coral reefs

(2011) Linda Wegley Kelly et al.   ISME Journal

Development of Bacterial Biofilms on Artificial Corals in Comparison to Surface-Associated Microbes of Hard Corals

(2011) Michael John Sweet et al.   PLoS One

High Abundance of Ammonia-Oxidizing Archaea in Coastal Waters, Determined Using a Modified DNA Extraction Method

(2010) H. Urakawa et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Activity, abundance and diversity of nitrifying archaea and bacteria in the central California Current

(2010) Alyson E. Santoro et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial Acquisition in Juveniles of Several Broadcast Spawning Coral Species

(2010) Koty H. Sharp et al.   PLoS One

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Plant-Associated Microbe Gene Ontology (PAMGO) Consortium: community development of new Gene Ontology terms describing biological processes involved in microbe-host interactions

(2009) Trudy Torto-Alalibo et al.   BMC MICROBIOLOGY

Metagenomic analysis of stressed coral holobionts

(2009) Rebecca Vega Thurber et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial functional structure ofMontastraea faveolata, an important Caribbean reef-building coral, differs between healthy and yellow-band diseased colonies

(2009) Nikole E. Kimes et al.   ENVIRONMENTAL MICROBIOLOGY

Net release of dissolved organic matter by the scleractinian coral Acropora pulchra

(2009) Yasuaki Tanaka et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Microbes Enriched in Seawater after Addition of Coral Mucus

(2008) E. Allers et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial Ecology of Four Coral Atolls in the Northern Line Islands

(2008) Elizabeth A. Dinsdale et al.   PLoS One