Different carboxyl‐rich alicyclic molecules proxy compounds select distinct bacterioplankton for oxidation of dissolved organic matter in the mesopelagic Sargasso Sea
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Title
Different carboxyl‐rich alicyclic molecules proxy compounds select distinct bacterioplankton for oxidation of dissolved organic matter in the mesopelagic Sargasso Sea
Authors
Keywords
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Journal
LIMNOLOGY AND OCEANOGRAPHY
Volume -, Issue -, Pages -
Publisher
Wiley
Online
2020-01-24
DOI
10.1002/lno.11405
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Note: Only part of the references are listed.- SAR11 bacteria have a high affinity and multifunctional glycine betaine transporter
- (2019) Stephen E. Noell et al. ENVIRONMENTAL MICROBIOLOGY
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- (2018) Kaijun Lu et al. ENVIRONMENTAL SCIENCE & TECHNOLOGY
- Organic carbon source and salinity shape sediment bacterial composition in two China marginal seas and their major tributaries
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- Metagenomes Reveal Global Distribution of Bacterial Steroid Catabolism in Natural, Engineered, and Host Environments
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- The impact of the Deepwater Horizon blowout on historic shipwreck-associated sediment microbiomes in the northern Gulf of Mexico
- (2018) Leila J. Hamdan et al. Scientific Reports
- High mutation rates limit evolutionary adaptation in Escherichia coli
- (2018) Kathleen Sprouffske et al. PLoS Genetics
- Extracellular Enzyme Activity Profile in a Chemically Enhanced Water Accommodated Fraction of Surrogate Oil: Toward Understanding Microbial Activities After the Deepwater Horizon Oil Spill
- (2018) Manoj Kamalanathan et al. Frontiers in Microbiology
- Bacterial contributions to delignification and lignocellulose degradation in forest soils with metagenomic and quantitative stable isotope probing
- (2018) Roland C. Wilhelm et al. ISME Journal
- Differential incorporation of one-carbon substrates among microbial populations identified by stable isotope probing from the estuary to South China Sea
- (2018) Wenchao Deng et al. Scientific Reports
- Cascading influence of inorganic nitrogen sources on DOM production, composition, lability and microbial community structure in the open ocean
- (2017) S. J. Goldberg et al. ENVIRONMENTAL MICROBIOLOGY
- Localized high abundance of Marine Group II archaea in the subtropical Pearl River Estuary: implications for their niche adaptation
- (2017) Wei Xie et al. ENVIRONMENTAL MICROBIOLOGY
- Unraveling signatures of biogeochemical processes and the depositional setting in the molecular composition of pore water DOM across different marine environments
- (2017) Frauke Schmidt et al. GEOCHIMICA ET COSMOCHIMICA ACTA
- The enigmatic SAR202 cluster up close: shedding light on a globally distributed dark ocean lineage involved in sulfur cycling
- (2017) Maliheh Mehrshad et al. ISME Journal
- Genomic reconstruction of multiple lineages of uncultured benthic archaea suggests distinct biogeochemical roles and ecological niches
- (2017) C S Lazar et al. ISME Journal
- Molecular composition of dissolved organic matter in the Mediterranean Sea
- (2017) Alba María Martínez-Pérez et al. LIMNOLOGY AND OCEANOGRAPHY
- Extraction efficiency and quantification of dissolved metabolites in targeted marine metabolomics
- (2017) Winifred M. Johnson et al. LIMNOLOGY AND OCEANOGRAPHY-METHODS
- Molecular properties of deep-sea dissolved organic matter are predictable by the central limit theorem: Evidence from tandem FT-ICR-MS
- (2017) Maren Zark et al. MARINE CHEMISTRY
- Simulation ofDeepwater Horizonoil plume reveals substrate specialization within a complex community of hydrocarbon degraders
- (2017) Ping Hu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Metabolic Roles of Uncultivated Bacterioplankton Lineages in the Northern Gulf of Mexico “Dead Zone”
- (2017) J. Cameron Thrash et al. mBio
- SAR202 Genomes from the Dark Ocean Predict Pathways for the Oxidation of Recalcitrant Dissolved Organic Matter
- (2017) Zachary Landry et al. mBio
- Variation of Oxygenation Conditions on a Hydrocarbonoclastic Microbial Community Reveals Alcanivorax and Cycloclasticus Ecotypes
- (2017) Fanny Terrisse et al. Frontiers in Microbiology
- Response of Bacterial Communities to Different Detritus Compositions in Arctic Deep-Sea Sediments
- (2017) Katy Hoffmann et al. Frontiers in Microbiology
- Tapping the archives: the sterol composition of marine sponge species, as determined non-invasively from museum-preserved specimens, reveals biogeographical features
- (2016) S. K. Lengger et al. Geobiology
- Spongiibacter taiwanensis sp. nov., a marine bacterium isolated from aged seawater
- (2016) INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Diverse, uncultivated bacteria and archaea underlying the cycling of dissolved protein in the ocean
- (2016) William D Orsi et al. ISME Journal
- DADA2: High-resolution sample inference from Illumina amplicon data
- (2016) Benjamin J Callahan et al. NATURE METHODS
- The Sponge Hologenome
- (2016) Nicole S. Webster et al. mBio
- The Size-Reactivity Continuum of Major Bioelements in the Ocean
- (2015) Ronald Benner et al. Annual Review of Marine Science
- Dissolved organic matter in newly formed sea ice and surface seawater
- (2015) Krista Longnecker GEOCHIMICA ET COSMOCHIMICA ACTA
- Dissolved organic matter composition and photochemical transformations in the northern North Pacific Ocean
- (2015) Patricia. M. Medeiros et al. GEOPHYSICAL RESEARCH LETTERS
- Synchronous shifts in dissolved organic carbon bioavailability and bacterial community responses over the course of an upwelling-driven phytoplankton bloom
- (2015) Emma K. Wear et al. LIMNOLOGY AND OCEANOGRAPHY
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- (2015) Melissa C. Kido Soule et al. MARINE CHEMISTRY
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- (2015) Byron Pedler Sherwood et al. MARINE CHEMISTRY
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- (2015) B. P. Koch et al. RAPID COMMUNICATIONS IN MASS SPECTROMETRY
- Identification of polyamine-responsive bacterioplankton taxa in South Atlantic Bight
- (2015) Xinxin Lu et al. Environmental Microbiology Reports
- Inefficient microbial production of refractory dissolved organic matter in the ocean
- (2015) Helena Osterholz et al. Nature Communications
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- Global biogeography of SAR11 marine bacteria
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- (2012) Sung Hun Kim et al. MOLECULES
- Amplification by PCR Artificially Reduces the Proportion of the Rare Biosphere in Microbial Communities
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- Comparative Genomics Reveals Adaptation by Alteromonas sp. SN2 to Marine Tidal-Flat Conditions: Cold Tolerance and Aromatic Hydrocarbon Metabolism
- (2012) Renukaradhya K. Math et al. PLoS One
- Untangling Genomes from Metagenomes: Revealing an Uncultured Class of Marine Euryarchaeota
- (2012) V. Iverson et al. SCIENCE
- Recalcitrant Dissolved Organic Carbon Fractions
- (2011) Dennis A. Hansell Annual Review of Marine Science
- Net Production and Consumption of Fluorescent Colored Dissolved Organic Matter by Natural Bacterial Assemblages Growing on Marine Phytoplankton Exudates
- (2011) Cristina Romera-Castillo et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Barcoding bias in high-throughput multiplex sequencing of miRNA
- (2011) S. Alon et al. GENOME RESEARCH
- Net removal of major marine dissolved organic carbon fractions in the subsurface ocean
- (2011) Dennis A. Hansell et al. GLOBAL BIOGEOCHEMICAL CYCLES
- Co-occurrence patterns for abundant marine archaeal and bacterial lineages in the deep chlorophyll maximum of coastal California
- (2011) J Michael Beman et al. ISME Journal
- Ocean time-series reveals recurring seasonal patterns of virioplankton dynamics in the northwestern Sargasso Sea
- (2011) Rachel J Parsons et al. ISME Journal
- Identification and characterization of two bile acid coenzyme A transferases fromClostridium scindens, a bile acid 7α-dehydroxylating intestinal bacterium
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- A simple and efficient method for the solid-phase extraction of dissolved organic matter (SPE-DOM) from seawater
- (2011) Thorsten Dittmar et al. LIMNOLOGY AND OCEANOGRAPHY-METHODS
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- Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil
- (2011) M. Tourna et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Natural gas and temperature structured a microbial community response to the Deepwater Horizon oil spill
- (2011) M. C. Redmond et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Dissolved organic carbon export and subsequent remineralization in the mesopelagic and bathypelagic realms of the North Atlantic basin
- (2010) Craig A. Carlson et al. DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY
- Genomic and functional adaptation in surface ocean planktonic prokaryotes
- (2010) Shibu Yooseph et al. NATURE
- Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea
- (2010) J. McCarren et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea
- (2010) C. B. Walker et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Role of mesoscale cyclonic eddies in the distribution and activity of Archaea and Bacteria in the South China Sea
- (2009) Y Zhang et al. AQUATIC MICROBIAL ECOLOGY
- Bile acid derivatives from a sponge-associated bacterium Psychrobacter sp.
- (2009) Huayue Li et al. ARCHIVES OF PHARMACAL RESEARCH
- Dynamics of the SAR11 bacterioplankton lineage in relation to environmental conditions in the oligotrophic North Pacific subtropical gyre
- (2009) Alexander Eiler et al. ENVIRONMENTAL MICROBIOLOGY
- Latitudinal distribution of prokaryotic picoplankton populations in the Atlantic Ocean
- (2009) Martha Schattenhofer et al. ENVIRONMENTAL MICROBIOLOGY
- Production of bioavailable and refractory dissolved organic matter by coastal heterotrophic microbial populations
- (2009) Christian Lønborg et al. ESTUARINE COASTAL AND SHELF SCIENCE
- Spongiibacter tropicus sp. nov., isolated from a Synechococcus culture
- (2009) C. Y. Hwang et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Seasonality and vertical structure of microbial communities in an ocean gyre
- (2009) Alexander H Treusch et al. ISME Journal
- The genomic basis of trophic strategy in marine bacteria
- (2009) F. M. Lauro et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Temporal dynamics of dissolved combined neutral sugars and the quality of dissolved organic matter in the Northwestern Sargasso Sea
- (2008) Stuart J. Goldberg et al. DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS
- Abundance and activity of Chloroflexi-type SAR202 bacterioplankton in the meso- and bathypelagic waters of the (sub)tropical Atlantic
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- (2008) Craig A Carlson et al. ISME Journal
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- Biochemical composition and size distribution of organic matter at the Pacific and Atlantic time-series stations
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- Amino acid and amino sugar yields and compositions as indicators of dissolved organic matter diagenesis
- (2008) Jenny Davis et al. ORGANIC GEOCHEMISTRY
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