Cyanobacterial distributions along a physico-chemical gradient in the Northeastern Pacific Ocean

Differential contributions of archaeal ammonia oxidizer ecotypes to nitrification in coastal surface waters

(2014) Jason M Smith et al.   ISME Journal

Single-Cell Genomics Reveals Hundreds of Coexisting Subpopulations in Wild Prochlorococcus

(2014) N. Kashtan et al.   SCIENCE

Phylogenetic diversity of nonmarine picocyanobacteria

(2013) Cristiana Callieri et al.   FEMS MICROBIOLOGY ECOLOGY

High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences

(2013) Kevin L Vergin et al.   ISME Journal

Surprisingly extensive mixed phylogenetic and ecological signals among bacterial Operational Taxonomic Units

(2013) Alexander F. Koeppel et al.   NUCLEIC ACIDS RESEARCH

Role of a Microcin-C-like biosynthetic gene cluster in allelopathic interactions in marine Synechococcus

(2013) J. Paz-Yepes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus

(2013) P. Flombaum et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The central California Current transition zone: A broad region exhibiting evidence for iron limitation

(2013) Dondra V. Biller et al.   PROGRESS IN OCEANOGRAPHY

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

Ecology of uncultured Prochlorococcus clades revealed through single-cell genomics and biogeographic analysis

(2012) Rex R Malmstrom et al.   ISME Journal

Diversity and population structure of Marine Group A bacteria in the Northeast subarctic Pacific Ocean

(2012) Elke Allers et al.   ISME Journal

Sharp gradients in phytoplankton community structure across a frontal zone in the California Current Ecosystem

(2012) A. G. Taylor et al.   JOURNAL OF PLANKTON RESEARCH

Phycoerythrin evolution and diversification of spectral phenotype in marine Synechococcus and related picocyanobacteria

(2012) R. Craig Everroad et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Diversity and Distribution of Marine Synechococcus: Multiple Gene Phylogenies for Consensus Classification and Development of qPCR Assays for Sensitive Measurement of Clades in the Ocean

(2012) Nathan A. Ahlgren et al.   Frontiers in Microbiology

Phosphate transporters in marine phytoplankton and their viruses: cross-domain commonalities in viral-host gene exchanges

(2011) Adam Monier et al.   ENVIRONMENTAL MICROBIOLOGY

Multi-locus sequence analysis, taxonomic resolution and biogeography of marine Synechococcus

(2011) Sophie Mazard et al.   ENVIRONMENTAL MICROBIOLOGY

Novel lineages of Prochlorococcus and Synechococcus in the global oceans

(2011) Sijun Huang et al.   ISME Journal

Global distribution patterns of distinct clades of the photosynthetic picoeukaryote Ostreococcus

(2011) Elif Demir-Hilton et al.   ISME Journal

Metagenomic potential of microbial assemblages in the surface waters of the central Pacific Ocean tracks variability in oceanic habitat

(2011) Ian Hewson et al.   LIMNOLOGY AND OCEANOGRAPHY

NH4-Digiscan: an in situ and laboratory ammonium analyzer for estuarine, coastal, and shelf waters

(2011) J. N. Plant et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

Morphological, Phylogenetic and Physiological Studies of Pico-Cyanobacteria Isolated from the Halocline of a Saline Meromictic Lake, Lake Suigetsu, Japan

(2011) Kaori Ohki et al.   MICROBES AND ENVIRONMENTS

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Non-Random Assembly of Bacterioplankton Communities in the Subtropical North Pacific Ocean

(2011) Alexander Eiler et al.   Frontiers in Microbiology

Differential Distributions of Synechococcus Subgroups Across the California Current System

(2011) Ryan W. Paerl et al.   Frontiers in Microbiology

pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree

(2010) Frederick A Matsen et al.   BMC BIOINFORMATICS

Temporal dynamics of Prochlorococcus ecotypes in the Atlantic and Pacific oceans

(2010) Rex R Malmstrom et al.   ISME Journal

A novel clade of Prochlorococcus found in high nutrient low chlorophyll waters in the South and Equatorial Pacific Ocean

(2010) Nyree J West et al.   ISME Journal

Characterization of Prochlorococcus clades from iron-depleted oceanic regions

(2010) D. B. Rusch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Novel lineages of Prochlorococcus thrive within the oxygen minimum zone of the eastern tropical South Pacific

(2010) Paris Lavin et al.   Environmental Microbiology Reports

Prochlorococcus: Advantages and Limits of Minimalism

(2009) Frédéric Partensky et al.   Annual Review of Marine Science

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Atomic force microscopy reveals microscale networks and possible symbioses among pelagic marine bacteria

(2009) F Malfatti et al.   AQUATIC MICROBIAL ECOLOGY

Phylogenetic diversity of Synechococcus strains isolated from the East China Sea and the East Sea

(2009) Dong Han Choi et al.   FEMS MICROBIOLOGY ECOLOGY

Temporal variation of Synechococcus clades at a coastal Pacific Ocean monitoring site

(2009) Vera Tai et al.   ISME Journal

Seasonality and vertical structure of microbial communities in an ocean gyre

(2009) Alexander H Treusch et al.   ISME Journal

Ecological Genomics of Marine Picocyanobacteria

(2009) D. J. Scanlan et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Widespread metabolic potential for nitrite and nitrate assimilation among Prochlorococcus ecotypes

(2009) A. C. Martiny et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Patterns and processes in the California Current System

(2009) David M. Checkley et al.   PROGRESS IN OCEANOGRAPHY

Colorful microdiversity of Synechococcus strains (picocyanobacteria) isolated from the Baltic Sea

(2008) Thomas H A Haverkamp et al.   ISME Journal

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION

Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex

(2008) Micah Hamady et al.   NATURE METHODS

rrnDB: documenting the number of rRNA and tRNA genes in bacteria and archaea

(2008) Z. M.-P. Lee et al.   NUCLEIC ACIDS RESEARCH

Unravelling the genomic mosaic of a ubiquitous genus of marine cyanobacteria

(2008) Alexis Dufresne et al.   GENOME BIOLOGY