- Home
- Publications
- Publication Search
- Publication Details
Title
Ecogenomics of the SAR11 clade
Authors
Keywords
-
Journal
ENVIRONMENTAL MICROBIOLOGY
Volume -, Issue -, Pages -
Publisher
Wiley
Online
2019-12-16
DOI
10.1111/1462-2920.14896
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Seasonal modulation of mesoscale processes alters nutrient availability and plankton communities in the Red Sea
- (2019) Benjamin Kürten et al. PROGRESS IN OCEANOGRAPHY
- Single-amino acid variants reveal evolutionary processes that shape the biogeography of a global SAR11 subclade
- (2019) Tom O Delmont et al. eLife
- Cultivation and genomics of the first freshwater SAR11 (LD12) isolate
- (2018) Michael W. Henson et al. ISME Journal
- Piercing the dark matter: bioinformatics of long-range sequencing and mapping
- (2018) Fritz J. Sedlazeck et al. NATURE REVIEWS GENETICS
- Fine metagenomic profile of the Mediterranean stratified and mixed water columns revealed by assembly and recruitment
- (2018) Jose M. Haro-Moreno et al. Microbiome
- The reconstruction of 2,631 draft metagenome-assembled genomes from the global oceans
- (2018) Benjamin J. Tully et al. Scientific Data
- Single-cell genomics uncover Pelagibacter as the putative host of the extremely abundant uncultured 37-F6 viral population in the ocean
- (2018) Francisco Martinez-Hernandez et al. ISME Journal
- Marine microbial metagenomes sampled across space and time
- (2018) Steven J. Biller et al. Scientific Data
- Single cell genomes of Prochlorococcus, Synechococcus, and sympatric microbes from diverse marine environments
- (2018) Paul M. Berube et al. Scientific Data
- Single-virus genomics reveals hidden cosmopolitan and abundant viruses
- (2017) Francisco Martinez-Hernandez et al. Nature Communications
- Improved genome recovery and integrated cell-size analyses of individual uncultured microbial cells and viral particles
- (2017) Ramunas Stepanauskas et al. Nature Communications
- 290 metagenome-assembled genomes from the Mediterranean Sea: a resource for marine microbiology
- (2017) Benjamin J. Tully et al. PeerJ
- MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
- (2016) Sudhir Kumar et al. MOLECULAR BIOLOGY AND EVOLUTION
- SAR11 bacteria linked to ocean anoxia and nitrogen loss
- (2016) Despina Tsementzi et al. NATURE
- Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
- (2016) Ivica Letunic et al. NUCLEIC ACIDS RESEARCH
- A catalogue of 136 microbial draft genomes from Red Sea metagenomes
- (2016) Mohamed F. Haroon et al. Scientific Data
- CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
- (2015) Donovan H. Parks et al. GENOME RESEARCH
- Selection Maintains Low Genomic GC Content in Marine SAR11 Lineages
- (2015) Haiwei Luo et al. MOLECULAR BIOLOGY AND EVOLUTION
- Structure and function of the global ocean microbiome
- (2015) S. Sunagawa et al. SCIENCE
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype
- (2014) J Cameron Thrash et al. ISME Journal
- Fast and sensitive protein alignment using DIAMOND
- (2014) Benjamin Buchfink et al. NATURE METHODS
- Obtaining genomes from uncultivated environmental microorganisms using FACS–based single-cell genomics
- (2014) Christian Rinke et al. Nature Protocols
- Methane production by phosphate-starved SAR11 chemoheterotrophic marine bacteria
- (2014) Paul Carini et al. Nature Communications
- Automated analysis of phylogenetic clusters
- (2013) Manon Ragonnet-Cronin et al. BMC BIOINFORMATICS
- Genomic Diversity of “Deep Ecotype” Alteromonas macleodii Isolates: Evidence for Pan-Mediterranean Clonal Frames
- (2013) Mario López-Pérez et al. Genome Biology and Evolution
- High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences
- (2013) Kevin L Vergin et al. ISME Journal
- The paradox of the plankton: species competition and nutrient feedback sustain phytoplankton diversity
- (2013) K Kenitz et al. MARINE ECOLOGY PROGRESS SERIES
- Ribosomal Database Project: data and tools for high throughput rRNA analysis
- (2013) James R. Cole et al. NUCLEIC ACIDS RESEARCH
- Comparative and Phylogenomic Evidence That the Alphaproteobacterium HIMB59 Is Not a Member of the Oceanic SAR11 Clade
- (2013) Johan Viklund et al. PLoS One
- Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean
- (2013) B. K. Swan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes
- (2013) Nicola Segata et al. Nature Communications
- Single-cell genomics reveal low recombination frequencies in freshwater bacteria of the SAR11 clade
- (2013) Katarzyna Zaremba-Niedzwiedzka et al. GENOME BIOLOGY
- Basin-scale patterns in the abundance of SAR11 subclades, marine Actinobacteria (OM1), members of the Roseobacter clade and OCS116 in the South Atlantic
- (2012) Robert M. Morris et al. ENVIRONMENTAL MICROBIOLOGY
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Global biogeography of SAR11 marine bacteria
- (2012) Mark V Brown et al. Molecular Systems Biology
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Genomic sequencing of uncultured microorganisms from single cells
- (2012) Roger S. Lasken NATURE REVIEWS MICROBIOLOGY
- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- Combined Analyses of the ITS Loci and the Corresponding 16S rRNA Genes Reveal High Micro- and Macrodiversity of SAR11 Populations in the Red Sea
- (2012) David Kamanda Ngugi et al. PLoS One
- Seasonality in Ocean Microbial Communities
- (2012) S. J. Giovannoni et al. SCIENCE
- Streamlining and Core Genome Conservation among Highly Divergent Members of the SAR11 Clade
- (2012) J. Grote et al. mBio
- Potential for phosphite and phosphonate utilization by Prochlorococcus
- (2011) Roi Feingersch et al. ISME Journal
- Seasonal bloom dynamics and ecophysiology of the freshwater sister clade of SAR11 bacteria ‘that rule the waves’ (LD12)
- (2011) Michaela M Salcher et al. ISME Journal
- Complete Genome Sequence of Strain IMCC9063, Belonging to SAR11 Subgroup 3, Isolated from the Arctic Ocean
- (2011) H.-M. Oh et al. JOURNAL OF BACTERIOLOGY
- Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean
- (2011) B. K. Swan et al. SCIENCE
- Accelerated Profile HMM Searches
- (2011) Sean R. Eddy PLoS Computational Biology
- CD-HIT Suite: a web server for clustering and comparing biological sequences
- (2010) Ying Huang et al. BIOINFORMATICS
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- Ecosystem-specific selection pressures revealed through comparative population genomics
- (2010) M. L. Coleman et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Identification of ribosomal RNA genes in metagenomic fragments
- (2009) Ying Huang et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Shifting the genomic gold standard for the prokaryotic species definition
- (2009) Michael Richter et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Seasonal dynamics of SAR11 populations in the euphotic and mesopelagic zones of the northwestern Sargasso Sea
- (2008) Craig A Carlson et al. ISME Journal
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started